Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_005800-T1 | |
LLU|FUN_005801-T1 | |
LLU|FUN_005802-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
LLU|FUN_005803-T1 | |
LLU|FUN_005804-T1 | |
LLU|FUN_005805-T1 | |
LLU|FUN_005806-T1 | |
LLU|FUN_005807-T1 | |
LLU|FUN_005808-T1 | |
LLU|FUN_005809-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
LLU|FUN_005810-T1 | |
LLU|FUN_005811-T1 | |
LLU|FUN_005812-T1 | |
LLU|FUN_005813-T1 | |
LLU|FUN_005814-T1 | |
LLU|FUN_005815-T1 | |
LLU|FUN_005816-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_005817-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_005818-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_005819-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_005820-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_005821-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_005822-T1 | |
LLU|FUN_005823-T1 | |
LLU|FUN_005824-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_005825-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_005826-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_005827-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_005828-T1 | |
LLU|FUN_005829-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_005830-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_005831-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_005832-T1 | |
LLU|FUN_005833-T1 | SUBGROUP IIII AMINOTRANSFERASE |
LLU|FUN_005834-T1 | |
LLU|FUN_005835-T1 | MULTIDRUG RESISTANCE PROTEIN |
LLU|FUN_005838-T1 | CASPASE |
LLU|FUN_005839-T1 | |
LLU|FUN_005840-T1 | |
LLU|FUN_005841-T1 | CASPASE |
LLU|FUN_005842-T1 | SORTING NEXIN-29-RELATED |
LLU|FUN_005843-T1 | JOSEPHIN 1, 2 |
LLU|FUN_005844-T1 | ELONGATION FACTOR TU-RELATED |
LLU|FUN_005845-T1 | SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING |
LLU|FUN_005846-T1 | OVOCHYMASE-RELATED |
LLU|FUN_005847-T1 | CUBILIN-LIKE PROTEIN |
LLU|FUN_005848-T1 | OVOCHYMASE-RELATED |
LLU|FUN_005849-T1 | |
LLU|FUN_005850-T1 | |
LLU|FUN_005851-T1 |