Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_005650-T1 | LEYDIG CELL TUMOR 10 KDA PROTEIN HOMOLOG |
LLU|FUN_005651-T1 | |
LLU|FUN_005652-T1 | RING ZINC FINGER |
LLU|FUN_005653-T1 | PROPERDIN |
LLU|FUN_005654-T1 | |
LLU|FUN_005655-T1 | PROTEIN CBG12054-RELATED |
LLU|FUN_005656-T1 | MED-6-RELATED |
LLU|FUN_005657-T1 | FLAP ENDONUCLEASE FAMILY MEMBER |
LLU|FUN_005658-T1 | |
LLU|FUN_005659-T1 | GOLGI MEMBRANE PROTEIN YIP1 |
LLU|FUN_005660-T1 | GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_005661-T1 | UNCHARACTERIZED |
LLU|FUN_005662-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
LLU|FUN_005663-T1 | |
LLU|FUN_005664-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
LLU|FUN_005665-T1 | |
LLU|FUN_005666-T1 | |
LLU|FUN_005667-T1 | |
LLU|FUN_005668-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
LLU|FUN_005669-T1 | NADPH OXIDASE |
LLU|FUN_005670-T1 | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 |
LLU|FUN_005671-T1 | |
LLU|FUN_005672-T1 | OXIDASE/PEROXIDASE |
LLU|FUN_005673-T1 | |
LLU|FUN_005674-T1 | DUAL OXIDASE 2 |
LLU|FUN_005675-T1 | |
LLU|FUN_005676-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
LLU|FUN_005677-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
LLU|FUN_005678-T1 | RETINOIC ACID-INDUCED PROTEIN 2 |
LLU|FUN_005679-T1 | RETINOIC ACID-INDUCED PROTEIN 2 |
LLU|FUN_005680-T1 | SAP18 |
LLU|FUN_005681-T1 | |
LLU|FUN_005682-T1 | NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1 |
LLU|FUN_005683-T1 | CHARGED MULTIVESICULAR BODY PROTEIN |
LLU|FUN_005684-T1 | DNA2/NAM7 HELICASE FAMILY |
LLU|FUN_005685-T1 | |
LLU|FUN_005686-T1 | FUKUTIN RELATED PROTEIN |
LLU|FUN_005687-T1 | |
LLU|FUN_005688-T1 | UNCHARACTERIZED |
LLU|FUN_005689-T1 | |
LLU|FUN_005690-T1 | |
LLU|FUN_005691-T1 | |
LLU|FUN_005692-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_005693-T1 | |
LLU|FUN_005694-T1 | |
LLU|FUN_005695-T1 | |
LLU|FUN_005696-T1 | |
LLU|FUN_005697-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_005698-T1 | TRICHOHYALIN-RELATED |
LLU|FUN_005699-T1 | FMRFAMIDE RECEPTOR-RELATED |