Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_006004-T1 | |
LLU|FUN_006005-T1 | |
LLU|FUN_006006-T1 | HILLARIN |
LLU|FUN_006007-T1 | |
LLU|FUN_006008-T1 | |
LLU|FUN_006009-T1 | HILLARIN |
LLU|FUN_006010-T1 | CYTOCHROME P450 508A4-RELATED |
LLU|FUN_006011-T1 | OS10G0105400 PROTEIN |
LLU|FUN_006012-T1 | |
LLU|FUN_006013-T1 | |
LLU|FUN_006014-T1 | |
LLU|FUN_006015-T1 | |
LLU|FUN_006016-T1 | |
LLU|FUN_006017-T1 | |
LLU|FUN_006018-T1 | |
LLU|FUN_006019-T1 | |
LLU|FUN_006020-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
LLU|FUN_006021-T1 | WD40 REPEAT PROTEIN |
LLU|FUN_006022-T1 | RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE |
LLU|FUN_006023-T1 | LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED |
LLU|FUN_006024-T1 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_006025-T1 | UNCHARACTERIZED |
LLU|FUN_006026-T1 | |
LLU|FUN_006027-T1 | PROTEIN B, PUTATIVE-RELATED-RELATED |
LLU|FUN_006028-T1 | LD39211P |
LLU|FUN_006029-T1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
LLU|FUN_006030-T1 | OS10G0105400 PROTEIN |
LLU|FUN_006031-T1 | PROTEIN CBG12054-RELATED |
LLU|FUN_006032-T1 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
LLU|FUN_006033-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_006034-T1 | |
LLU|FUN_006035-T1 | |
LLU|FUN_006036-T1 | B-CELL RECEPTOR CD22 |
LLU|FUN_006037-T1 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT |
LLU|FUN_006038-T1 | |
LLU|FUN_006039-T1 | TRANSMEMBRANE PROTEASE SERINE |
LLU|FUN_006040-T1 | |
LLU|FUN_006041-T1 | |
LLU|FUN_006042-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_006043-T1 | |
LLU|FUN_006044-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_006045-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_006046-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_006047-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_006048-T1 | |
LLU|FUN_006049-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_006050-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_006051-T1 | |
LLU|FUN_006052-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_006053-T1 |