Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_006158-T1 | HEPARAN SULFATE SULFOTRANSFERASE |
LLU|FUN_006159-T1 | |
LLU|FUN_006160-T1 | |
LLU|FUN_006161-T1 | HEPARAN SULFATE SULFOTRANSFERASE |
LLU|FUN_006162-T1 | METHIONINE AMINOPEPTIDASE 2 |
LLU|FUN_006163-T1 | CXYORF1 |
LLU|FUN_006164-T1 | |
LLU|FUN_006165-T1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
LLU|FUN_006166-T1 | |
LLU|FUN_006167-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 6 |
LLU|FUN_006168-T1 | |
LLU|FUN_006169-T1 | PHD FINGER PROTEINS |
LLU|FUN_006170-T1 | BCR-ASSOCIATED PROTEIN, BAP |
LLU|FUN_006171-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
LLU|FUN_006172-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
LLU|FUN_006173-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
LLU|FUN_006174-T1 | |
LLU|FUN_006175-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
LLU|FUN_006176-T1 | |
LLU|FUN_006177-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
LLU|FUN_006178-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
LLU|FUN_006179-T1 | BEIGE/BEACH-RELATED |
LLU|FUN_006180-T1 | |
LLU|FUN_006181-T1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
LLU|FUN_006182-T1 | SI:DKEY-276J7.1 |
LLU|FUN_006183-T1 | |
LLU|FUN_006184-T1 | |
LLU|FUN_006185-T1 | SI:CH211-262H13.3-RELATED-RELATED |
LLU|FUN_006186-T1 | CHITIN SYNTHASE |
LLU|FUN_006187-T1 | |
LLU|FUN_006188-T1 | CHITIN SYNTHASE |
LLU|FUN_006189-T1 | |
LLU|FUN_006190-T1 | CHITIN SYNTHASE |
LLU|FUN_006191-T1 | UNCHARACTERIZED |
LLU|FUN_006192-T1 | OVARIAN CARCINOMA ANTIGEN CA125-RELATED |
LLU|FUN_006193-T1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
LLU|FUN_006194-T1 | CYTOCHROME C OXIDASE ASSEMBLY FACTOR 1 HOMOLOG |
LLU|FUN_006195-T1 | BICOID-INTERACTING PROTEIN RELATED |
LLU|FUN_006196-T1 | RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT |
LLU|FUN_006197-T1 | PEPTIDYLPROLYL ISOMERASE |
LLU|FUN_006198-T1 | TGF-BETA INDUCED APOPTOSIS PROTEIN |
LLU|FUN_006199-T1 | |
LLU|FUN_006200-T1 | SLEI FAMILY PROTEIN |
LLU|FUN_006201-T1 | |
LLU|FUN_006202-T1 | |
LLU|FUN_006203-T1 | |
LLU|FUN_006204-T1 | |
LLU|FUN_006205-T1 | CROSSVEINLESS 2 |
LLU|FUN_006206-T1 | |
LLU|FUN_006207-T1 |