Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_006258-T1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
LLU|FUN_006259-T1 | |
LLU|FUN_006260-T1 | |
LLU|FUN_006261-T1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
LLU|FUN_006262-T1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
LLU|FUN_006263-T1 | |
LLU|FUN_006264-T1 | |
LLU|FUN_006265-T1 | |
LLU|FUN_006266-T1 | |
LLU|FUN_006267-T1 | |
LLU|FUN_006268-T1 | |
LLU|FUN_006269-T1 | |
LLU|FUN_006270-T1 | |
LLU|FUN_006271-T1 | |
LLU|FUN_006272-T1 | UNCHARACTERIZED |
LLU|FUN_006273-T1 | |
LLU|FUN_006274-T1 | STRAWBERRY NOTCH-RELATED |
LLU|FUN_006275-T1 | TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN |
LLU|FUN_006276-T1 | EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER |
LLU|FUN_006277-T1 | |
LLU|FUN_006278-T1 | |
LLU|FUN_006279-T1 | |
LLU|FUN_006280-T1 | UNCHARACTERIZED |
LLU|FUN_006281-T1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
LLU|FUN_006282-T1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
LLU|FUN_006283-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_006284-T1 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
LLU|FUN_006285-T1 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
LLU|FUN_006286-T1 | |
LLU|FUN_006287-T1 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
LLU|FUN_006288-T1 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
LLU|FUN_006289-T1 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
LLU|FUN_006290-T1 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
LLU|FUN_006291-T1 | |
LLU|FUN_006292-T1 | |
LLU|FUN_006293-T1 | |
LLU|FUN_006294-T1 | |
LLU|FUN_006295-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_006296-T1 | |
LLU|FUN_006297-T1 | |
LLU|FUN_006298-T1 | |
LLU|FUN_006299-T1 | |
LLU|FUN_006300-T1 | |
LLU|FUN_006301-T1 | ADAPTOR PROTEIN, PHOSPHOTYROSINE INTERACTION, PH DOMAIN AND LEUCINE ZIPPER-CONTAINING 2 |
LLU|FUN_006302-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
LLU|FUN_006303-T1 | |
LLU|FUN_006304-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
LLU|FUN_006305-T1 | EIF-1A |
LLU|FUN_006306-T1 | SULFOTRANSFERASE SULT |
LLU|FUN_006307-T1 | SULFOTRANSFERASE SULT |