About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14408
Clavulariidae_g14409
Clavulariidae_g1441
Clavulariidae_g14410
Clavulariidae_g14411
Clavulariidae_g14412LD33695P
Clavulariidae_g14413DNA POLYMERASE
Clavulariidae_g14414
Clavulariidae_g14415PROTEIN CBG26694
Clavulariidae_g14416PROTEIN CBG26694
Clavulariidae_g14417REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14418
Clavulariidae_g14419
Clavulariidae_g1442REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14420LD33695P
Clavulariidae_g14421
Clavulariidae_g14422
Clavulariidae_g14423
Clavulariidae_g14424
Clavulariidae_g14425
Clavulariidae_g14426
Clavulariidae_g14427REVERSE TRANSCRIPTASES
Clavulariidae_g14428
Clavulariidae_g14429
Clavulariidae_g1443PROTEIN CBG26694
Clavulariidae_g14430
Clavulariidae_g14431
Clavulariidae_g14432THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g14433
Clavulariidae_g14434CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14435PROTEIN CBG26694
Clavulariidae_g14436
Clavulariidae_g14437
Clavulariidae_g14438
Clavulariidae_g14439TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1444ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14440
Clavulariidae_g14441
Clavulariidae_g14442HCLS1-ASSOCIATED PROTEIN X-1
Clavulariidae_g14443
Clavulariidae_g14444EXPRESSED PROTEIN
Clavulariidae_g14445LD33695P
Clavulariidae_g1444626S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2
Clavulariidae_g14447ETS
Clavulariidae_g14448DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g14449
Clavulariidae_g1445
Clavulariidae_g14450CARBOXYLESTERASE
Clavulariidae_g14451
Clavulariidae_g14452
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