Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g14543 | SMAD |
Clavulariidae_g14544 | SMAD |
Clavulariidae_g14545 | TYROSINE-PROTEIN KINASE RECEPTOR |
Clavulariidae_g14546 | ACID PHOSPHATASE-RELATED |
Clavulariidae_g14547 | BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 6 |
Clavulariidae_g14548 | SMAD |
Clavulariidae_g14549 | GAMMA GLUTAMYL TRANSPEPTIDASE |
Clavulariidae_g1455 | |
Clavulariidae_g14550 | ORGANIC ANION TRANSPORTER |
Clavulariidae_g14551 | |
Clavulariidae_g14552 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g14553 | TRANSCRIPTIONAL REPRESSOR PROTEIN YY |
Clavulariidae_g14554 | PROTEIN SIDEKICK |
Clavulariidae_g14555 | |
Clavulariidae_g14556 | |
Clavulariidae_g14557 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g14558 | |
Clavulariidae_g14559 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g1456 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Clavulariidae_g14560 | TRANSPOSASE, PUTATIVE-RELATED |
Clavulariidae_g14561 | NG5 |
Clavulariidae_g14562 | CYTOCHROME P450 FAMILY 4 |
Clavulariidae_g14563 | FUKUTIN RELATED PROTEIN |
Clavulariidae_g14564 | CYSTEINE PROTEASE FAMILY C1-RELATED |
Clavulariidae_g14565 | NG5 |
Clavulariidae_g14566 | NG5 |
Clavulariidae_g14567 | NG5 |
Clavulariidae_g14568 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
Clavulariidae_g14569 | |
Clavulariidae_g1457 | |
Clavulariidae_g14570 | |
Clavulariidae_g14571 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR |
Clavulariidae_g14572 | SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11 |
Clavulariidae_g14573 | |
Clavulariidae_g14574 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
Clavulariidae_g14575 | SERINE/THREONINE PROTEIN KINASE |
Clavulariidae_g14576 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
Clavulariidae_g14577 | |
Clavulariidae_g14578 | CYTOKINE RECEPTOR |
Clavulariidae_g14579 | CYTOKINE RECEPTOR |
Clavulariidae_g1458 | |
Clavulariidae_g14580 | CYTOKINE RECEPTOR |
Clavulariidae_g14581 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g14582 | CYTOKINE RECEPTOR |
Clavulariidae_g14583 | UNCHARACTERIZED |
Clavulariidae_g14584 | MYC PROTO-ONCOGENE |
Clavulariidae_g14585 | DEATH DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14586 | TRANSMEMBRANE PROTEIN 214 |
Clavulariidae_g14587 | SUSHI DOMAIN-CONTAINING PROTEIN 1 |
Clavulariidae_g14588 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |