About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14543SMAD
Clavulariidae_g14544SMAD
Clavulariidae_g14545TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g14546ACID PHOSPHATASE-RELATED
Clavulariidae_g14547BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 6
Clavulariidae_g14548SMAD
Clavulariidae_g14549GAMMA GLUTAMYL TRANSPEPTIDASE
Clavulariidae_g1455
Clavulariidae_g14550ORGANIC ANION TRANSPORTER
Clavulariidae_g14551
Clavulariidae_g14552DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g14553TRANSCRIPTIONAL REPRESSOR PROTEIN YY
Clavulariidae_g14554PROTEIN SIDEKICK
Clavulariidae_g14555
Clavulariidae_g14556
Clavulariidae_g14557MULTICOPPER OXIDASE-RELATED
Clavulariidae_g14558
Clavulariidae_g14559INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g1456FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g14560TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g14561NG5
Clavulariidae_g14562CYTOCHROME P450 FAMILY 4
Clavulariidae_g14563FUKUTIN RELATED PROTEIN
Clavulariidae_g14564CYSTEINE PROTEASE FAMILY C1-RELATED
Clavulariidae_g14565NG5
Clavulariidae_g14566NG5
Clavulariidae_g14567NG5
Clavulariidae_g14568PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
Clavulariidae_g14569
Clavulariidae_g1457
Clavulariidae_g14570
Clavulariidae_g14571BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR
Clavulariidae_g14572SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11
Clavulariidae_g14573
Clavulariidae_g14574BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
Clavulariidae_g14575SERINE/THREONINE PROTEIN KINASE
Clavulariidae_g14576ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Clavulariidae_g14577
Clavulariidae_g14578CYTOKINE RECEPTOR
Clavulariidae_g14579CYTOKINE RECEPTOR
Clavulariidae_g1458
Clavulariidae_g14580CYTOKINE RECEPTOR
Clavulariidae_g14581MULTICOPPER OXIDASE-RELATED
Clavulariidae_g14582CYTOKINE RECEPTOR
Clavulariidae_g14583UNCHARACTERIZED
Clavulariidae_g14584MYC PROTO-ONCOGENE
Clavulariidae_g14585DEATH DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14586TRANSMEMBRANE PROTEIN 214
Clavulariidae_g14587SUSHI DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g14588REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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