About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14363
Clavulariidae_g14364POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g14365
Clavulariidae_g14366EXPRESSED PROTEIN
Clavulariidae_g14367
Clavulariidae_g14368REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14369NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
Clavulariidae_g1437
Clavulariidae_g14370ATP-DEPENDENT DNA HELICASE
Clavulariidae_g14371
Clavulariidae_g14372EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14373THAP DOMAIN PROTEIN
Clavulariidae_g14374INTERFERON REGULATORY FACTOR
Clavulariidae_g14375RETROTRANSPOSON
Clavulariidae_g14376
Clavulariidae_g14377
Clavulariidae_g14378INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14379
Clavulariidae_g1438
Clavulariidae_g14380
Clavulariidae_g14381
Clavulariidae_g14382
Clavulariidae_g14383DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE
Clavulariidae_g14384
Clavulariidae_g14385
Clavulariidae_g14386DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE
Clavulariidae_g14387
Clavulariidae_g14388
Clavulariidae_g14389PROTEIN CBG23764
Clavulariidae_g1439THAP DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g14390
Clavulariidae_g14391INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g14392ENDONUCLEASE-RELATED
Clavulariidae_g14393REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14394DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE
Clavulariidae_g14395DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14396
Clavulariidae_g14397ATP-DEPENDENT DNA HELICASE
Clavulariidae_g14398
Clavulariidae_g14399ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g144
Clavulariidae_g1440THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g14400
Clavulariidae_g14401RETROTRANSPOSON
Clavulariidae_g14402PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14403
Clavulariidae_g14404LD33695P
Clavulariidae_g14405PROTEIN CBG26694
Clavulariidae_g14406SI:CH1073-475A24.1
Clavulariidae_g14407DNA HELICASE RECQ FAMILY MEMBER
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