About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14228METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE
Clavulariidae_g14229
Clavulariidae_g1423REVERSE TRANSCRIPTASES
Clavulariidae_g14230
Clavulariidae_g14231
Clavulariidae_g14232
Clavulariidae_g14233SI:CH211-196P9.1-RELATED
Clavulariidae_g14234ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14235ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14236DYSFERLIN-RELATED
Clavulariidae_g14237
Clavulariidae_g14238
Clavulariidae_g14239
Clavulariidae_g1424
Clavulariidae_g14240PROTEIN CBG26694
Clavulariidae_g14241
Clavulariidae_g14242
Clavulariidae_g14243PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14244EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14245DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g14246PROTEIN CBG26694
Clavulariidae_g14247PROTEIN CBG26694
Clavulariidae_g14248CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14249
Clavulariidae_g1425RETROTRANSPOSON
Clavulariidae_g14250REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14251LEUCINE RICH REPEAT FAMILY PROTEIN
Clavulariidae_g14252PERIOSTIN-RELATED
Clavulariidae_g14253PROTEIN ARGININE N-METHYLTRANSFERASE
Clavulariidae_g14254ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14255REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14256SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN
Clavulariidae_g14257SLR5058 PROTEIN
Clavulariidae_g14258THAP DOMAIN PROTEIN
Clavulariidae_g14259EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1426
Clavulariidae_g14260
Clavulariidae_g14261DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g14262ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14263PROTEIN CBG23764
Clavulariidae_g14264
Clavulariidae_g14265PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14266
Clavulariidae_g14267RETROTRANSPOSON
Clavulariidae_g14268
Clavulariidae_g14269
Clavulariidae_g1427
Clavulariidae_g14270PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14271
Clavulariidae_g14272ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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