Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g14228 | METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE |
Clavulariidae_g14229 | |
Clavulariidae_g1423 | REVERSE TRANSCRIPTASES |
Clavulariidae_g14230 | |
Clavulariidae_g14231 | |
Clavulariidae_g14232 | |
Clavulariidae_g14233 | SI:CH211-196P9.1-RELATED |
Clavulariidae_g14234 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14235 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14236 | DYSFERLIN-RELATED |
Clavulariidae_g14237 | |
Clavulariidae_g14238 | |
Clavulariidae_g14239 | |
Clavulariidae_g1424 | |
Clavulariidae_g14240 | PROTEIN CBG26694 |
Clavulariidae_g14241 | |
Clavulariidae_g14242 | |
Clavulariidae_g14243 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14244 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14245 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g14246 | PROTEIN CBG26694 |
Clavulariidae_g14247 | PROTEIN CBG26694 |
Clavulariidae_g14248 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g14249 | |
Clavulariidae_g1425 | RETROTRANSPOSON |
Clavulariidae_g14250 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14251 | LEUCINE RICH REPEAT FAMILY PROTEIN |
Clavulariidae_g14252 | PERIOSTIN-RELATED |
Clavulariidae_g14253 | PROTEIN ARGININE N-METHYLTRANSFERASE |
Clavulariidae_g14254 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14255 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14256 | SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN |
Clavulariidae_g14257 | SLR5058 PROTEIN |
Clavulariidae_g14258 | THAP DOMAIN PROTEIN |
Clavulariidae_g14259 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1426 | |
Clavulariidae_g14260 | |
Clavulariidae_g14261 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g14262 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14263 | PROTEIN CBG23764 |
Clavulariidae_g14264 | |
Clavulariidae_g14265 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14266 | |
Clavulariidae_g14267 | RETROTRANSPOSON |
Clavulariidae_g14268 | |
Clavulariidae_g14269 | |
Clavulariidae_g1427 | |
Clavulariidae_g14270 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14271 | |
Clavulariidae_g14272 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |