About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14273
Clavulariidae_g14274
Clavulariidae_g14275PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Clavulariidae_g14276
Clavulariidae_g14277
Clavulariidae_g14278SPONDIN
Clavulariidae_g14279L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g1428ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14280
Clavulariidae_g14281SPONDIN
Clavulariidae_g14282THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g14283
Clavulariidae_g14284UNCHARACTERIZED
Clavulariidae_g14285-
Clavulariidae_g14286
Clavulariidae_g14287TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g14288THAP DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g14289
Clavulariidae_g1429REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14290CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14291SUBGROUP IIII AMINOTRANSFERASE
Clavulariidae_g14292REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14293
Clavulariidae_g14294G PROTEIN-COUPLED RECEPTOR-RELATED
Clavulariidae_g14295G PROTEIN-COUPLED RECEPTOR-RELATED
Clavulariidae_g14296INTELECTIN
Clavulariidae_g14297REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14298REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14299PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g143
Clavulariidae_g1430PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Clavulariidae_g14300CENTROMERE PROTEIN E
Clavulariidae_g14301UNCHARACTERIZED
Clavulariidae_g14302
Clavulariidae_g14303THAP DOMAIN PROTEIN
Clavulariidae_g14304ZINC FINGER PROTEIN
Clavulariidae_g14305
Clavulariidae_g14306SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g14307-
Clavulariidae_g14308ATP-DEPENDENT DNA HELICASE
Clavulariidae_g14309
Clavulariidae_g1431
Clavulariidae_g14310
Clavulariidae_g14311INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g14312ZINC FINGER PROTEIN
Clavulariidae_g14313
Clavulariidae_g14314TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g14315PROTEIN CBG26694
Clavulariidae_g14316
Clavulariidae_g14317REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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