Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g14138 | ATP-BINDING CASSETTE SUB-FAMILY B |
| Clavulariidae_g14139 | |
| Clavulariidae_g1414 | |
| Clavulariidae_g14140 | CARBOXYLESTERASE |
| Clavulariidae_g14141 | METHYLTRANSFERASE |
| Clavulariidae_g14142 | |
| Clavulariidae_g14143 | THAP DOMAIN-CONTAINING PROTEIN 6 |
| Clavulariidae_g14144 | THAP DOMAIN-CONTAINING PROTEIN 6 |
| Clavulariidae_g14145 | TRANSPOSASE, PUTATIVE-RELATED |
| Clavulariidae_g14146 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g14147 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14148 | ZINC FINGER PROTEIN |
| Clavulariidae_g14149 | |
| Clavulariidae_g1415 | INTERFERON-INDUCIBLE GTPASE |
| Clavulariidae_g14150 | |
| Clavulariidae_g14151 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Clavulariidae_g14152 | SIMILAR TO RIKEN CDNA E130308A19 |
| Clavulariidae_g14153 | MULTICOPPER OXIDASE-RELATED |
| Clavulariidae_g14154 | |
| Clavulariidae_g14155 | PROTEIN CBG23764 |
| Clavulariidae_g14156 | |
| Clavulariidae_g14157 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14158 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14159 | |
| Clavulariidae_g1416 | EXPRESSED PROTEIN |
| Clavulariidae_g14160 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14161 | UNCHARACTERIZED |
| Clavulariidae_g14162 | |
| Clavulariidae_g14163 | |
| Clavulariidae_g14164 | RETROTRANSPOSON |
| Clavulariidae_g14165 | |
| Clavulariidae_g14166 | SIMILAR TO RIKEN CDNA E130308A19 |
| Clavulariidae_g14167 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14168 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g14169 | GLPR-RELATED TRANSCRIPTIONAL REPRESSOR |
| Clavulariidae_g1417 | PHYTOENE DESATURASE |
| Clavulariidae_g14170 | |
| Clavulariidae_g14171 | EXPRESSED PROTEIN |
| Clavulariidae_g14172 | GLPR-RELATED TRANSCRIPTIONAL REPRESSOR |
| Clavulariidae_g14173 | |
| Clavulariidae_g14174 | REVERSE TRANSCRIPTASE |
| Clavulariidae_g14175 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14176 | PROTEIN CBG23764 |
| Clavulariidae_g14177 | PX DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14178 | |
| Clavulariidae_g14179 | ATP-BINDING CASSETTE SUB-FAMILY B |
| Clavulariidae_g1418 | TPR REPEAT CONTAINING PROTEIN |
| Clavulariidae_g14180 | |
| Clavulariidae_g14181 | SI:CH211-266K2.1 |
| Clavulariidae_g14182 |
