About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14002INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g14003INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g14004PHYTOENE DESATURASE
Clavulariidae_g14005COLLAGEN ALPHA
Clavulariidae_g14006
Clavulariidae_g14007
Clavulariidae_g14008
Clavulariidae_g14009
Clavulariidae_g1401
Clavulariidae_g14010
Clavulariidae_g14011ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14012TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
Clavulariidae_g14013PROTEASOME INHIBITOR
Clavulariidae_g14014COLLAGEN ALPHA
Clavulariidae_g14015HYR DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14016INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g14017INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g14018PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14019COLLAGEN ALPHA
Clavulariidae_g1402
Clavulariidae_g14020GLIAL CELLS MISSING RELATED/GLIDE
Clavulariidae_g14021CENTROMERE PROTEIN U
Clavulariidae_g14022PERFORIN-LIKE PROTEIN 1
Clavulariidae_g14023TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g14024PERFORIN-LIKE PROTEIN 1
Clavulariidae_g14025PERFORIN-LIKE PROTEIN 1
Clavulariidae_g14026PERFORIN-LIKE PROTEIN 1
Clavulariidae_g14027
Clavulariidae_g14028PERFORIN-LIKE PROTEIN 1
Clavulariidae_g14029ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1403DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Clavulariidae_g14030
Clavulariidae_g14031
Clavulariidae_g14032RETROTRANSPOSON
Clavulariidae_g14033ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14034
Clavulariidae_g14035
Clavulariidae_g14036PERFORIN-LIKE PROTEIN 1
Clavulariidae_g14037RHO GTPASE-ACTIVATING PROTEIN 190
Clavulariidae_g14038DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Clavulariidae_g14039
Clavulariidae_g1404
Clavulariidae_g14040REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14041DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g14042TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g14043PROTEIN CBG26694
Clavulariidae_g14044GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g14045CXC2 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14046
Clavulariidae_g14047REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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