Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g13733 | |
Clavulariidae_g13734 | |
Clavulariidae_g13735 | TYROSINE-PROTEIN KINASE |
Clavulariidae_g13736 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g13737 | |
Clavulariidae_g13738 | |
Clavulariidae_g13739 | |
Clavulariidae_g1374 | |
Clavulariidae_g13740 | P53 REGULATED PA26 NUCLEAR PROTEIN SESTRIN |
Clavulariidae_g13741 | |
Clavulariidae_g13742 | TRANSCRIPTION FACTOR E2F |
Clavulariidae_g13743 | RRNA-PROCESSING PROTEIN EFG1 |
Clavulariidae_g13744 | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g13745 | 2-OXOGLUTARATE DEHYDROGENASE |
Clavulariidae_g13746 | ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED |
Clavulariidae_g13747 | AGAP011099-PA |
Clavulariidae_g13748 | |
Clavulariidae_g13749 | NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1 |
Clavulariidae_g1375 | EXPRESSED PROTEIN |
Clavulariidae_g13750 | |
Clavulariidae_g13751 | ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1 |
Clavulariidae_g13752 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
Clavulariidae_g13753 | PHENAZINE BIOSYNTHESIS PROTEIN |
Clavulariidae_g13754 | BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED |
Clavulariidae_g13755 | |
Clavulariidae_g13756 | DYNACTIN P62 SUBUNIT |
Clavulariidae_g13757 | ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE |
Clavulariidae_g13758 | ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED |
Clavulariidae_g13759 | RETROTRANSPOSON |
Clavulariidae_g1376 | |
Clavulariidae_g13760 | |
Clavulariidae_g13761 | ANTHRAX TOXIN RECEPTOR |
Clavulariidae_g13762 | GLUTATHIONE REDUCTASE |
Clavulariidae_g13763 | PKSB |
Clavulariidae_g13764 | TGF-BETA FAMILY |
Clavulariidae_g13765 | PKSB |
Clavulariidae_g13766 | ACETYLGLUCOSAMINYLTRANSFERASE |
Clavulariidae_g13767 | OROFACIAL CLEFT 1 CANDIDATE GENE 1 PROTEIN |
Clavulariidae_g13768 | LIPASE |
Clavulariidae_g13769 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
Clavulariidae_g1377 | RETROTRANSPOSON |
Clavulariidae_g13770 | |
Clavulariidae_g13771 | GENERAL VESICULAR TRANSPORT FACTOR P115 |
Clavulariidae_g13772 | UNCHARACTERIZED |
Clavulariidae_g13773 | WNT RELATED |
Clavulariidae_g13774 | |
Clavulariidae_g13775 | |
Clavulariidae_g13776 | LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN |
Clavulariidae_g13777 | DPY30-RELATED |
Clavulariidae_g13778 | ZINC-FINGER PROTEIN NOLZ1-RELATED |