About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g13733
Clavulariidae_g13734
Clavulariidae_g13735TYROSINE-PROTEIN KINASE
Clavulariidae_g13736PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g13737
Clavulariidae_g13738
Clavulariidae_g13739
Clavulariidae_g1374
Clavulariidae_g13740P53 REGULATED PA26 NUCLEAR PROTEIN SESTRIN
Clavulariidae_g13741
Clavulariidae_g13742TRANSCRIPTION FACTOR E2F
Clavulariidae_g13743RRNA-PROCESSING PROTEIN EFG1
Clavulariidae_g13744ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g137452-OXOGLUTARATE DEHYDROGENASE
Clavulariidae_g13746ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED
Clavulariidae_g13747AGAP011099-PA
Clavulariidae_g13748
Clavulariidae_g13749NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1
Clavulariidae_g1375EXPRESSED PROTEIN
Clavulariidae_g13750
Clavulariidae_g13751ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1
Clavulariidae_g13752PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Clavulariidae_g13753PHENAZINE BIOSYNTHESIS PROTEIN
Clavulariidae_g13754BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
Clavulariidae_g13755
Clavulariidae_g13756DYNACTIN P62 SUBUNIT
Clavulariidae_g13757ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE
Clavulariidae_g13758ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED
Clavulariidae_g13759RETROTRANSPOSON
Clavulariidae_g1376
Clavulariidae_g13760
Clavulariidae_g13761ANTHRAX TOXIN RECEPTOR
Clavulariidae_g13762GLUTATHIONE REDUCTASE
Clavulariidae_g13763PKSB
Clavulariidae_g13764TGF-BETA FAMILY
Clavulariidae_g13765PKSB
Clavulariidae_g13766ACETYLGLUCOSAMINYLTRANSFERASE
Clavulariidae_g13767OROFACIAL CLEFT 1 CANDIDATE GENE 1 PROTEIN
Clavulariidae_g13768LIPASE
Clavulariidae_g13769DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED
Clavulariidae_g1377RETROTRANSPOSON
Clavulariidae_g13770
Clavulariidae_g13771GENERAL VESICULAR TRANSPORT FACTOR P115
Clavulariidae_g13772UNCHARACTERIZED
Clavulariidae_g13773WNT RELATED
Clavulariidae_g13774
Clavulariidae_g13775
Clavulariidae_g13776LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN
Clavulariidae_g13777DPY30-RELATED
Clavulariidae_g13778ZINC-FINGER PROTEIN NOLZ1-RELATED
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