Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g13508 | PENTRAXIN |
| Clavulariidae_g13509 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g1351 | RH59310P |
| Clavulariidae_g13510 | |
| Clavulariidae_g13511 | |
| Clavulariidae_g13512 | |
| Clavulariidae_g13513 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g13514 | |
| Clavulariidae_g13515 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g13516 | RICIN B-TYPE LECTIN DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13517 | BRYOPORIN |
| Clavulariidae_g13518 | |
| Clavulariidae_g13519 | |
| Clavulariidae_g1352 | SIMILAR TO RIKEN CDNA E130308A19 |
| Clavulariidae_g13520 | |
| Clavulariidae_g13521 | ENZYMATIC POLYPROTEIN-RELATED |
| Clavulariidae_g13522 | ENDONUCLEASE-RELATED |
| Clavulariidae_g13523 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| Clavulariidae_g13524 | |
| Clavulariidae_g13525 | |
| Clavulariidae_g13526 | 5-HYDROXYTRYPTAMINE RECEPTOR |
| Clavulariidae_g13527 | INTELECTIN |
| Clavulariidae_g13528 | SELECTIN LIGAND RELATED |
| Clavulariidae_g13529 | ASPARTATE AMINOTRANSFERASE |
| Clavulariidae_g1353 | PROTEIN CBG26694 |
| Clavulariidae_g13530 | LD33804P |
| Clavulariidae_g13531 | ARYLSULFATASE FAMILY MEMBER |
| Clavulariidae_g13532 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 |
| Clavulariidae_g13533 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H |
| Clavulariidae_g13534 | TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED |
| Clavulariidae_g13535 | 5-OXOPROLINASE RELATED |
| Clavulariidae_g13536 | HTH-TYPE TRANSCRIPTIONAL REGULATOR |
| Clavulariidae_g13537 | AMINOHYDROLASE SSNA-RELATED |
| Clavulariidae_g13538 | ALLANTOICASE |
| Clavulariidae_g13539 | POLYSACCHARIDE DEACETYLASE-RELATED |
| Clavulariidae_g1354 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g13540 | PYRUVATE KINASE |
| Clavulariidae_g13541 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| Clavulariidae_g13542 | ISOMERASE |
| Clavulariidae_g13543 | THIAMINE PYROPHOSPHATE ENZYMES |
| Clavulariidae_g13544 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| Clavulariidae_g13545 | |
| Clavulariidae_g13546 | HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE |
| Clavulariidae_g13547 | PYRUVATE DEHYDROGENASE E1 COMPONENT |
| Clavulariidae_g13548 | DISULFIDE OXIDOREDUCTASE |
| Clavulariidae_g13549 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| Clavulariidae_g1355 | CYTOCHROME P450 508A4-RELATED |
| Clavulariidae_g13550 | AMINO-ACID AMINOTRANSFERASE |
| Clavulariidae_g13551 | D-ALANYL-D-ALANINE CARBOXYPEPTIDASE |
| Clavulariidae_g13552 | - |
