About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g13328REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13329
Clavulariidae_g1333
Clavulariidae_g13330MOLTING PROTEIN MLT-4
Clavulariidae_g13331
Clavulariidae_g13332VOLTAGE-GATED POTASSIUM CHANNEL
Clavulariidae_g13333APPLE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13334BONUS, ISOFORM C-RELATED
Clavulariidae_g13335BONUS, ISOFORM C-RELATED
Clavulariidae_g13336
Clavulariidae_g13337THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g13338REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13339DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1334STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g13340RETROTRANSPOSON
Clavulariidae_g13341REVERSE TRANSCRIPTASES
Clavulariidae_g13342
Clavulariidae_g13343MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED
Clavulariidae_g13344
Clavulariidae_g13345VOLTAGE-GATED POTASSIUM CHANNEL
Clavulariidae_g13346SH3 DOMAIN-CONTAINING
Clavulariidae_g13347-
Clavulariidae_g13348PROTEIN CBG23764
Clavulariidae_g13349DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g1335ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13350
Clavulariidae_g13351DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g13352
Clavulariidae_g13353KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g13354POL PROTEIN
Clavulariidae_g13355
Clavulariidae_g13356PROTEIN CBG23764
Clavulariidae_g13357COLLAGEN ALPHA
Clavulariidae_g13358ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13359REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1336
Clavulariidae_g13360REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13361INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g13362
Clavulariidae_g13363
Clavulariidae_g13364
Clavulariidae_g13365
Clavulariidae_g13366DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13367
Clavulariidae_g13368
Clavulariidae_g13369PROTEIN CBG26694
Clavulariidae_g1337
Clavulariidae_g13370ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13371
Clavulariidae_g13372
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