Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g13102 | RETROTRANSPOSON |
| Clavulariidae_g13103 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13104 | |
| Clavulariidae_g13105 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13106 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13107 | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 |
| Clavulariidae_g13108 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13109 | |
| Clavulariidae_g1311 | RETROTRANSPOSON |
| Clavulariidae_g13110 | EXPRESSED PROTEIN |
| Clavulariidae_g13111 | |
| Clavulariidae_g13112 | |
| Clavulariidae_g13113 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13114 | |
| Clavulariidae_g13115 | |
| Clavulariidae_g13116 | |
| Clavulariidae_g13117 | THAP DOMAIN-CONTAINING PROTEIN 6 |
| Clavulariidae_g13118 | |
| Clavulariidae_g13119 | RETROTRANSPOSON |
| Clavulariidae_g1312 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Clavulariidae_g13120 | RETROTRANSPOSON |
| Clavulariidae_g13121 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13122 | PROTEIN-TYROSINE SULFOTRANSFERASE 2 |
| Clavulariidae_g13123 | OSMOSIS RESPONSIVE FACTOR |
| Clavulariidae_g13124 | |
| Clavulariidae_g13125 | PROTEIN CBG26694 |
| Clavulariidae_g13126 | |
| Clavulariidae_g13127 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13128 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13129 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1313 | |
| Clavulariidae_g13130 | |
| Clavulariidae_g13131 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13132 | TRANSMEMBRANE GTPASE FZO1 |
| Clavulariidae_g13133 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13134 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13135 | |
| Clavulariidae_g13136 | RETROTRANSPOSON |
| Clavulariidae_g13137 | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 |
| Clavulariidae_g13138 | PROTEIN-TYROSINE SULFOTRANSFERASE 2 |
| Clavulariidae_g13139 | |
| Clavulariidae_g1314 | PROTEIN, PUTATIVE-RELATED |
| Clavulariidae_g13140 | ENZYMATIC POLYPROTEIN-RELATED |
| Clavulariidae_g13141 | |
| Clavulariidae_g13142 | |
| Clavulariidae_g13143 | ENZYMATIC POLYPROTEIN-RELATED |
| Clavulariidae_g13144 | CARBONIC ANHYDRASE |
| Clavulariidae_g13145 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| Clavulariidae_g13146 | MACROGLOBULIN / COMPLEMENT |
| Clavulariidae_g13147 | MACROGLOBULIN / COMPLEMENT |
