Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g13148 | RETROTRANSPOSON |
| Clavulariidae_g13149 | RETROTRANSPOSON |
| Clavulariidae_g1315 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Clavulariidae_g13150 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13151 | SIMILAR TO RIKEN CDNA E130308A19 |
| Clavulariidae_g13152 | FTP DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13153 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13154 | |
| Clavulariidae_g13155 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13156 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g13157 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13158 | |
| Clavulariidae_g13159 | |
| Clavulariidae_g1316 | |
| Clavulariidae_g13160 | |
| Clavulariidae_g13161 | RETROTRANSPOSON |
| Clavulariidae_g13162 | PROTEIN CBG26694 |
| Clavulariidae_g13163 | FTP DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13164 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g13165 | |
| Clavulariidae_g13166 | |
| Clavulariidae_g13167 | PROTEIN CBG26694 |
| Clavulariidae_g13168 | |
| Clavulariidae_g13169 | WD40 REPEAT PROTEIN |
| Clavulariidae_g1317 | |
| Clavulariidae_g13170 | |
| Clavulariidae_g13171 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g13172 | |
| Clavulariidae_g13173 | MADF DOMAIN TRANSCRIPTION FACTOR |
| Clavulariidae_g13174 | UNCHARACTERIZED |
| Clavulariidae_g13175 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13176 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g13177 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g13178 | |
| Clavulariidae_g13179 | L-ASPARAGINASE |
| Clavulariidae_g1318 | - |
| Clavulariidae_g13180 | |
| Clavulariidae_g13181 | ALIPHATIC SULFONATES-BINDING PROTEIN-RELATED |
| Clavulariidae_g13182 | TWO-COMPONENT HISTIDINE PROTEIN KINASE |
| Clavulariidae_g13183 | PHYTOCHROME-LIKE PROTEIN CPH1 |
| Clavulariidae_g13184 | |
| Clavulariidae_g13185 | TRANSCRIPTIONAL REGULATOR YQJI |
| Clavulariidae_g13186 | CYSTEINE DESULFURASE |
| Clavulariidae_g13187 | PROTEIN ABCI7, CHLOROPLASTIC |
| Clavulariidae_g13188 | ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC |
| Clavulariidae_g13189 | FES CLUSTER ASSEMBLY PROTEIN SUF |
| Clavulariidae_g1319 | |
| Clavulariidae_g13190 | UNCHARACTERIZED |
| Clavulariidae_g13191 | BLL5896 PROTEIN |
| Clavulariidae_g13192 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
