Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g13283 | PROTEIN CBG26694 |
| Clavulariidae_g13284 | |
| Clavulariidae_g13285 | PROTEIN CBG26694 |
| Clavulariidae_g13286 | |
| Clavulariidae_g13287 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g13288 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13289 | RETROTRANSPOSON |
| Clavulariidae_g1329 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Clavulariidae_g13290 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
| Clavulariidae_g13291 | AMMONIUM TRANSPORTER |
| Clavulariidae_g13292 | |
| Clavulariidae_g13293 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13294 | SI:CH211-108C17.2-RELATED-RELATED |
| Clavulariidae_g13295 | |
| Clavulariidae_g13296 | |
| Clavulariidae_g13297 | BRYOPORIN |
| Clavulariidae_g13298 | RICIN B-TYPE LECTIN DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13299 | |
| Clavulariidae_g133 | RETROTRANSPOSON |
| Clavulariidae_g1330 | DNA HELICASE RECQ FAMILY MEMBER |
| Clavulariidae_g13300 | |
| Clavulariidae_g13301 | |
| Clavulariidae_g13302 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g13303 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g13304 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13305 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13306 | COLLAGEN ALPHA |
| Clavulariidae_g13307 | DNA-BINDING PROTEIN-RELATED-RELATED |
| Clavulariidae_g13308 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13309 | |
| Clavulariidae_g1331 | |
| Clavulariidae_g13310 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g13311 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13312 | |
| Clavulariidae_g13313 | PENTRAXIN |
| Clavulariidae_g13314 | THAP DOMAIN PROTEIN |
| Clavulariidae_g13315 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13316 | |
| Clavulariidae_g13317 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13318 | RETROTRANSPOSON |
| Clavulariidae_g13319 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1332 | |
| Clavulariidae_g13320 | |
| Clavulariidae_g13321 | DNA POLYMERASE |
| Clavulariidae_g13322 | DNA POLYMERASE |
| Clavulariidae_g13323 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g13324 | |
| Clavulariidae_g13325 | |
| Clavulariidae_g13326 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g13327 |
