About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g13012
Clavulariidae_g13013
Clavulariidae_g13014
Clavulariidae_g13015UNCHARACTERIZED
Clavulariidae_g13016
Clavulariidae_g13017RETROTRANSPOSON
Clavulariidae_g13018PROTEIN G1-LIKE2
Clavulariidae_g13019PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1302
Clavulariidae_g13020REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13021REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13022SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g13023
Clavulariidae_g13024
Clavulariidae_g13025PROTEIN CBG26694
Clavulariidae_g13026
Clavulariidae_g13027
Clavulariidae_g13028DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g13029PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1303
Clavulariidae_g13030DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g13031F-BOX ONLY PROTEIN 47
Clavulariidae_g13032COPINE FAMILY PROTEIN 1
Clavulariidae_g13033THAP DOMAIN PROTEIN
Clavulariidae_g13034
Clavulariidae_g13035
Clavulariidae_g13036DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g13037PROTEIN CBG26694
Clavulariidae_g13038ZINC FINGER PROTEIN 142
Clavulariidae_g13039ZINC FINGER PROTEIN
Clavulariidae_g1304RETROTRANSPOSON
Clavulariidae_g13040PROTEIN CBG26694
Clavulariidae_g13041PROTEIN CBG26694
Clavulariidae_g13042MULTICOPPER OXIDASE-RELATED
Clavulariidae_g13043RETROTRANSPOSON
Clavulariidae_g13044
Clavulariidae_g13045FTP DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13046SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g13047ZGC:195170
Clavulariidae_g13048FTP DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13049
Clavulariidae_g1305PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13050EXPRESSED PROTEIN
Clavulariidae_g13051TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
Clavulariidae_g13052
Clavulariidae_g13053
Clavulariidae_g13054ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13055DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13056SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g13057
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