About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g128335-HYDROXYTRYPTAMINE RECEPTOR
Clavulariidae_g12834DNAJ HOMOLOG SUBFAMILY C MEMBER 30, MITOCHONDRIAL
Clavulariidae_g12835SACSIN
Clavulariidae_g12836SACSIN
Clavulariidae_g12837DNA POLYMERASE
Clavulariidae_g12838
Clavulariidae_g12839COLLAGEN ALPHA
Clavulariidae_g1284T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12840
Clavulariidae_g12841SACSIN
Clavulariidae_g12842TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g12843RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12844RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12845TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g12846LD33804P
Clavulariidae_g12847SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 2
Clavulariidae_g12848PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
Clavulariidae_g12849E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED
Clavulariidae_g1285ENDONUCLEASE-RELATED
Clavulariidae_g12850SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED
Clavulariidae_g12851
Clavulariidae_g12852OPSIN
Clavulariidae_g12853UNCHARACTERIZED
Clavulariidae_g12854ALPHA- 1,3 -FUCOSYLTRANSFERASE
Clavulariidae_g12855CARBOHYDRATE SULFOTRANSFERASE
Clavulariidae_g12856METHYLTRANSFERASE-LIKE PROTEIN 24
Clavulariidae_g12857
Clavulariidae_g12858UNCHARACTERIZED
Clavulariidae_g12859UNCHARACTERIZED
Clavulariidae_g1286PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12860SERINE/THREONINE-PROTEIN KINASE
Clavulariidae_g12861METHYLTRANSFERASE
Clavulariidae_g12862SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
Clavulariidae_g12863MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22
Clavulariidae_g12864MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED
Clavulariidae_g12865MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED
Clavulariidae_g12866SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
Clavulariidae_g12867
Clavulariidae_g12868SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
Clavulariidae_g12869SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
Clavulariidae_g1287RETROTRANSPOSON
Clavulariidae_g12870RETROTRANSPOSON
Clavulariidae_g12871SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g12872SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g12873SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g12874MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED
Clavulariidae_g12875TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g12876PROTEIN CBG26694
Clavulariidae_g12877MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED
Clavulariidae_g12878RETROTRANSPOSON
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