About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12653DIPHTHINE METHYLTRANSFERASE
Clavulariidae_g12654MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10
Clavulariidae_g12655MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10
Clavulariidae_g12656UNCHARACTERIZED
Clavulariidae_g12657DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2
Clavulariidae_g12658RAN BINDING PROTEIN
Clavulariidae_g12659ENDOPLASMIC RETICULUM PROTEIN ERP29
Clavulariidae_g1266HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12660APOPTOSIS-INDUCING FACTOR 1
Clavulariidae_g12661GPI TRANSAMIDASE COMPONENT PIG-S
Clavulariidae_g12662YDJC DEACETYLASE FAMILY MEMBER
Clavulariidae_g12663ISOCITRATE LYASE/MALATE SYNTHASE
Clavulariidae_g12664MALATE SYNTHASE
Clavulariidae_g12665SYNAPTOSOMAL ASSOCIATED PROTEIN
Clavulariidae_g12666BCL7 RELATED
Clavulariidae_g12667
Clavulariidae_g12668BREAST CARCINOMA AMPLIFIED SEQUENCE 3
Clavulariidae_g12669PHOSPHATIDYLINOSITOL TRANSFER PROTEIN
Clavulariidae_g1267DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g12670T-BOX PROTEIN-RELATED
Clavulariidae_g12671T-BOX PROTEIN-RELATED
Clavulariidae_g12672DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
Clavulariidae_g12673
Clavulariidae_g12674
Clavulariidae_g12675
Clavulariidae_g12676
Clavulariidae_g12677
Clavulariidae_g12678N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED
Clavulariidae_g12679SH2B ADAPTER PROTEIN
Clavulariidae_g1268PROPERDIN
Clavulariidae_g12680CCAAT DISPLACEMENT PROTEIN-RELATED
Clavulariidae_g12681FRUCTOSE-BISPHOSPHATE ALDOLASE
Clavulariidae_g12682EG:EG0003.4 PROTEIN-RELATED
Clavulariidae_g12683ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 2
Clavulariidae_g12684REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
Clavulariidae_g12685ANTIGEN MLAA-22-RELATED
Clavulariidae_g12686B9 DOMAIN-CONTAINING
Clavulariidae_g12687PHOSPHOSERINE PHOSPHATASE
Clavulariidae_g12688TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g12689TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g1269
Clavulariidae_g12690OS02G0202900 PROTEIN
Clavulariidae_g12691TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g12692TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g12693LD33804P
Clavulariidae_g12694PHOSPHOLIPASE B-RELATED
Clavulariidae_g12695SESQUIPEDALIAN
Clavulariidae_g12696POTE ANKYRIN DOMAIN
Clavulariidae_g12697CARBONIC ANHYDRASE
Clavulariidae_g12698ARMC5 ARMADILLO REPEAT-CONTAINING -RELATED
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