About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12383
Clavulariidae_g12384ANKYRIN REPEAT PROTEIN
Clavulariidae_g12385REVERSE TRANSCRIPTASE
Clavulariidae_g12386REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12387REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12388ANKYRIN REPEAT PROTEIN
Clavulariidae_g12389SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g1239PROTEIN CBG23806
Clavulariidae_g12390
Clavulariidae_g12391ETS
Clavulariidae_g12392PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12393REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12394RETROTRANSPOSON
Clavulariidae_g12395ANKYRIN REPEAT FAMILY PROTEIN
Clavulariidae_g12396IRE1-RELATED
Clavulariidae_g12397PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12398
Clavulariidae_g12399
Clavulariidae_g124C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1240AGAP005574-PA
Clavulariidae_g12400ANKYRIN REPEAT-CONTAINING
Clavulariidae_g12401REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12402IRE1-RELATED
Clavulariidae_g12403REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12404RETROTRANSPOSON
Clavulariidae_g12405ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
Clavulariidae_g12406IRE1-RELATED
Clavulariidae_g12407PROTEIN CBG26694
Clavulariidae_g12408REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12409TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Clavulariidae_g1241
Clavulariidae_g12410EXPRESSED PROTEIN
Clavulariidae_g12411
Clavulariidae_g12412-
Clavulariidae_g12413
Clavulariidae_g12414
Clavulariidae_g12415SOLUTE CARRIER FAMILY 22 MEMBER
Clavulariidae_g12416AKT1 SUBSTRATE 1 PROTEIN
Clavulariidae_g12417
Clavulariidae_g12418ATP-DEPENDENT DNA HELICASE
Clavulariidae_g12419
Clavulariidae_g1242RETROTRANSPOSON
Clavulariidae_g12420TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Clavulariidae_g12421EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12422THAP DOMAIN PROTEIN
Clavulariidae_g12423TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Clavulariidae_g12424ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 31-RELATED
Clavulariidae_g12425ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12426
Clavulariidae_g12427TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
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