Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g12383 | |
Clavulariidae_g12384 | ANKYRIN REPEAT PROTEIN |
Clavulariidae_g12385 | REVERSE TRANSCRIPTASE |
Clavulariidae_g12386 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12387 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12388 | ANKYRIN REPEAT PROTEIN |
Clavulariidae_g12389 | SERINE-THREONINE PROTEIN KINASE |
Clavulariidae_g1239 | PROTEIN CBG23806 |
Clavulariidae_g12390 | |
Clavulariidae_g12391 | ETS |
Clavulariidae_g12392 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12393 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12394 | RETROTRANSPOSON |
Clavulariidae_g12395 | ANKYRIN REPEAT FAMILY PROTEIN |
Clavulariidae_g12396 | IRE1-RELATED |
Clavulariidae_g12397 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12398 | |
Clavulariidae_g12399 | |
Clavulariidae_g124 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1240 | AGAP005574-PA |
Clavulariidae_g12400 | ANKYRIN REPEAT-CONTAINING |
Clavulariidae_g12401 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12402 | IRE1-RELATED |
Clavulariidae_g12403 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12404 | RETROTRANSPOSON |
Clavulariidae_g12405 | ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED |
Clavulariidae_g12406 | IRE1-RELATED |
Clavulariidae_g12407 | PROTEIN CBG26694 |
Clavulariidae_g12408 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12409 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
Clavulariidae_g1241 | |
Clavulariidae_g12410 | EXPRESSED PROTEIN |
Clavulariidae_g12411 | |
Clavulariidae_g12412 | - |
Clavulariidae_g12413 | |
Clavulariidae_g12414 | |
Clavulariidae_g12415 | SOLUTE CARRIER FAMILY 22 MEMBER |
Clavulariidae_g12416 | AKT1 SUBSTRATE 1 PROTEIN |
Clavulariidae_g12417 | |
Clavulariidae_g12418 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g12419 | |
Clavulariidae_g1242 | RETROTRANSPOSON |
Clavulariidae_g12420 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
Clavulariidae_g12421 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12422 | THAP DOMAIN PROTEIN |
Clavulariidae_g12423 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
Clavulariidae_g12424 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 31-RELATED |
Clavulariidae_g12425 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12426 | |
Clavulariidae_g12427 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |