Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g12158 | N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE |
Clavulariidae_g12159 | N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE |
Clavulariidae_g1216 | |
Clavulariidae_g12160 | N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE |
Clavulariidae_g12161 | N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE |
Clavulariidae_g12162 | PROTEASE M1 ZINC METALLOPROTEASE |
Clavulariidae_g12163 | BCS1 AAA-TYPE ATPASE |
Clavulariidae_g12164 | MYOTROPHIN |
Clavulariidae_g12165 | ADDITIONAL SEX COMBS LIKE PROTEIN ASXL |
Clavulariidae_g12166 | REGULATOR OF G-PROTEIN SIGNALING 22 |
Clavulariidae_g12167 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, MITOCHONDRIAL |
Clavulariidae_g12168 | STATHMIN |
Clavulariidae_g12169 | |
Clavulariidae_g1217 | TYROSINE-PROTEIN KINASE RECEPTOR |
Clavulariidae_g12170 | SERINE/THREONINE-PROTEIN KINASE RIO1 |
Clavulariidae_g12171 | |
Clavulariidae_g12172 | |
Clavulariidae_g12173 | MULTI-COPPER OXIDASE |
Clavulariidae_g12174 | MULTI-COPPER OXIDASE |
Clavulariidae_g12175 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 |
Clavulariidae_g12176 | GREB1-RELATED |
Clavulariidae_g12177 | |
Clavulariidae_g12178 | NEURENSIN 1-RELATED |
Clavulariidae_g12179 | ELONGIN-C |
Clavulariidae_g1218 | |
Clavulariidae_g12180 | SYNTENIN RELATED |
Clavulariidae_g12181 | COMPLEMENT COMPONENT C6 |
Clavulariidae_g12182 | COMPLEMENT COMPONENT C6 |
Clavulariidae_g12183 | PEROXISOMAL MEMBRANE PROTEIN PEX13 |
Clavulariidae_g12184 | PROLACTIN REGULATORY ELEMENT BINDING PROTEIN |
Clavulariidae_g12185 | CYTOSOLIC CARBOXYPEPTIDASE |
Clavulariidae_g12186 | CYTOSOLIC CARBOXYPEPTIDASE |
Clavulariidae_g12187 | GTP-BINDING PROTEIN-RELATED |
Clavulariidae_g12188 | WD-REPEAT PROTEIN |
Clavulariidae_g12189 | 40S RIBOSOMAL PROTEIN S21 |
Clavulariidae_g1219 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12190 | |
Clavulariidae_g12191 | HISTONE ACETYLTRANSFERASE |
Clavulariidae_g12192 | AEROLYSIN-LIKE PROTEIN-RELATED |
Clavulariidae_g12193 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
Clavulariidae_g12194 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
Clavulariidae_g12195 | SOLUTE CARRIER FAMILY 35 MEMBER B |
Clavulariidae_g12196 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
Clavulariidae_g12197 | |
Clavulariidae_g12198 | INTELECTIN |
Clavulariidae_g12199 | |
Clavulariidae_g122 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1220 | PROTEIN SIDEKICK |
Clavulariidae_g12200 | |
Clavulariidae_g12201 | PROTEIN G1-LIKE2 |