About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12293
Clavulariidae_g12294AGAP005574-PA
Clavulariidae_g12295ZGC:195170
Clavulariidae_g12296
Clavulariidae_g12297
Clavulariidae_g12298
Clavulariidae_g12299NADPH OXIDASE
Clavulariidae_g123
Clavulariidae_g1230
Clavulariidae_g12300HEXAMETHYLENE BISACETAMIDE INDUCIBLE 1
Clavulariidae_g12301LD24721P
Clavulariidae_g12302
Clavulariidae_g12303
Clavulariidae_g12304UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g12305
Clavulariidae_g12306
Clavulariidae_g12307
Clavulariidae_g12308ATP-DEPENDENT DNA HELICASE
Clavulariidae_g12309
Clavulariidae_g1231
Clavulariidae_g12310
Clavulariidae_g12311
Clavulariidae_g12312
Clavulariidae_g12313
Clavulariidae_g12314LD24721P
Clavulariidae_g12315LD24721P
Clavulariidae_g12316
Clavulariidae_g12317DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 HOMOLOG SUPPRESSIN
Clavulariidae_g12318F-BOX ONLY PROTEIN
Clavulariidae_g12319G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g1232
Clavulariidae_g12320ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g12321
Clavulariidae_g12322DNA POLYMERASE
Clavulariidae_g12323INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g12324LEUCOKININ RECEPTOR-RELATED
Clavulariidae_g123252-HACID_DH_C DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12326REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12327NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
Clavulariidae_g12328GATA ZINC FINGER DOMAIN-CONTAINING
Clavulariidae_g12329METHYLTRANSFERASE
Clavulariidae_g1233ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g12330FI19922P1-RELATED
Clavulariidae_g12331PROTEIN CBG26694
Clavulariidae_g12332ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12333REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12334
Clavulariidae_g12335
Clavulariidae_g12336INNER MEMBRANE TRANSPORT PROTEIN YAJR
Clavulariidae_g12337
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