Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g12248 | LD33695P |
Clavulariidae_g12249 | ACROSIN-RELATED |
Clavulariidae_g1225 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g12250 | |
Clavulariidae_g12251 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
Clavulariidae_g12252 | NB-ARC AND TPR DOMAIN PROTEIN |
Clavulariidae_g12253 | CELLULAR TUMOR ANTIGEN P53 |
Clavulariidae_g12254 | RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED |
Clavulariidae_g12255 | DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] |
Clavulariidae_g12256 | 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE |
Clavulariidae_g12257 | VOLTAGE-GATED POTASSIUM CHANNEL |
Clavulariidae_g12258 | VOLTAGE-GATED POTASSIUM CHANNEL |
Clavulariidae_g12259 | VOLTAGE-GATED POTASSIUM CHANNEL |
Clavulariidae_g1226 | |
Clavulariidae_g12260 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
Clavulariidae_g12261 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12262 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
Clavulariidae_g12263 | |
Clavulariidae_g12264 | KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE |
Clavulariidae_g12265 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12266 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12267 | |
Clavulariidae_g12268 | |
Clavulariidae_g12269 | TRANSPOSASE, PUTATIVE-RELATED |
Clavulariidae_g1227 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g12270 | DEPHOSPHO-COA KINASE-RELATED |
Clavulariidae_g12271 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
Clavulariidae_g12272 | |
Clavulariidae_g12273 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
Clavulariidae_g12274 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
Clavulariidae_g12275 | PROTEIN CBG26694 |
Clavulariidae_g12276 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12277 | |
Clavulariidae_g12278 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12279 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
Clavulariidae_g1228 | |
Clavulariidae_g12280 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g12281 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g12282 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g12283 | EXPRESSED PROTEIN |
Clavulariidae_g12284 | |
Clavulariidae_g12285 | CYSTINOSIN |
Clavulariidae_g12286 | DEDICATOR OF CYTOKINESIS DOCK |
Clavulariidae_g12287 | VOLTAGE-GATED POTASSIUM CHANNEL |
Clavulariidae_g12288 | RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 |
Clavulariidae_g12289 | |
Clavulariidae_g1229 | |
Clavulariidae_g12290 | |
Clavulariidae_g12291 | |
Clavulariidae_g12292 |