About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g1CST COMPLEX SUBUNIT CTC1
Clavulariidae_g10
Clavulariidae_g100
Clavulariidae_g1000POL PROTEIN
Clavulariidae_g10000
Clavulariidae_g10001
Clavulariidae_g10002SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g10003
Clavulariidae_g10004ATP-DEPENDENT DNA HELICASE
Clavulariidae_g10005
Clavulariidae_g10006UNCHARACTERIZED
Clavulariidae_g10007
Clavulariidae_g10008
Clavulariidae_g10009
Clavulariidae_g1001REVERSE TRANSCRIPTASES
Clavulariidae_g10010ATP-DEPENDENT DNA HELICASE
Clavulariidae_g10011
Clavulariidae_g10012RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10013RETROTRANSPOSON
Clavulariidae_g10014CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10015
Clavulariidae_g10016REVERSE TRANSCRIPTASE
Clavulariidae_g10017EXPRESSED PROTEIN
Clavulariidae_g10018
Clavulariidae_g10019
Clavulariidae_g1002PUTATIVE-RELATED
Clavulariidae_g10020CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10021CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10022
Clavulariidae_g10023
Clavulariidae_g10024
Clavulariidae_g10025HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g10026
Clavulariidae_g10027-
Clavulariidae_g10028
Clavulariidae_g10029RETROTRANSPOSON
Clavulariidae_g1003HEH2P
Clavulariidae_g10030
Clavulariidae_g10031UNCHARACTERIZED
Clavulariidae_g10032
Clavulariidae_g10033
Clavulariidae_g10034
Clavulariidae_g10035
Clavulariidae_g10036UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g10037
Clavulariidae_g10038L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g10039ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1004
Clavulariidae_g10040CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10041CXC DOMAIN-CONTAINING PROTEIN-RELATED
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