About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10222
Clavulariidae_g10223HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Clavulariidae_g10224RETROTRANSPOSON
Clavulariidae_g10225
Clavulariidae_g10226-
Clavulariidae_g10227DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10228
Clavulariidae_g10229
Clavulariidae_g1023
Clavulariidae_g10230CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10231CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10232EXPRESSED PROTEIN
Clavulariidae_g10233
Clavulariidae_g10234
Clavulariidae_g10235
Clavulariidae_g10236REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10237RETROTRANSPOSON
Clavulariidae_g10238RETROTRANSPOSON
Clavulariidae_g10239DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1024RETROTRANSPOSON
Clavulariidae_g10240CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10241
Clavulariidae_g10242
Clavulariidae_g10243
Clavulariidae_g10244
Clavulariidae_g10245
Clavulariidae_g10246
Clavulariidae_g10247
Clavulariidae_g10248RETROTRANSPOSON
Clavulariidae_g10249RETROTRANSPOSON
Clavulariidae_g1025PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10250TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g10251PROTEIN CBG26694
Clavulariidae_g10252C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10253C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10254
Clavulariidae_g10255
Clavulariidae_g10256GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN
Clavulariidae_g10257REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10258
Clavulariidae_g10259EXPRESSED PROTEIN
Clavulariidae_g1026PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10260
Clavulariidae_g10261RETROTRANSPOSON
Clavulariidae_g10262
Clavulariidae_g10263
Clavulariidae_g10264GLR0591 PROTEIN
Clavulariidae_g10265PROTEIN CBG26694
Clavulariidae_g10266
Clavulariidae_g10267FLAP ENDONUCLEASE FAMILY MEMBER
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