About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10358REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10359HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS
Clavulariidae_g1036
Clavulariidae_g10360DUAL SPECIFICITY PROTEIN KINASE
Clavulariidae_g10361RETROTRANSPOSON
Clavulariidae_g10362REVERSE TRANSCRIPTASES
Clavulariidae_g10363
Clavulariidae_g10364RETROTRANSPOSON
Clavulariidae_g10365TRANSPOSASE
Clavulariidae_g10366RETROTRANSPOSON
Clavulariidae_g10367COLLAGEN ALPHA
Clavulariidae_g10368RETROTRANSPOSON
Clavulariidae_g10369PROTEIN CBG23764
Clavulariidae_g1037
Clavulariidae_g10370
Clavulariidae_g10371
Clavulariidae_g10372TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g10373
Clavulariidae_g10374
Clavulariidae_g10375DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10376PROTEIN CBG26694
Clavulariidae_g10377PROTEIN CBG26694
Clavulariidae_g10378ENDONUCLEASE-RELATED
Clavulariidae_g10379
Clavulariidae_g1038REVERSE TRANSCRIPTASES
Clavulariidae_g10380ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10381DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10382SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g10383
Clavulariidae_g10384
Clavulariidae_g10385DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10386PROTEIN CBG26694
Clavulariidae_g10387
Clavulariidae_g10388REVERSE TRANSCRIPTASE
Clavulariidae_g10389
Clavulariidae_g1039
Clavulariidae_g10390PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10391KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g10392
Clavulariidae_g10393
Clavulariidae_g10394PROTEIN CBG26694
Clavulariidae_g10395EXPRESSED PROTEIN
Clavulariidae_g10396ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10397
Clavulariidae_g10398
Clavulariidae_g10399DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g104
Clavulariidae_g1040
Clavulariidae_g10400
Clavulariidae_g10401HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN
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