About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10448
Clavulariidae_g10449
Clavulariidae_g1045MYND-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10450
Clavulariidae_g10451PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10452RETROTRANSPOSON
Clavulariidae_g10453PROTEIN CBG26694
Clavulariidae_g10454REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10455
Clavulariidae_g10456PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10457PROTEIN CBG26694
Clavulariidae_g10458PROTEIN CBG26694
Clavulariidae_g10459REVERSE TRANSCRIPTASES
Clavulariidae_g1046
Clavulariidae_g10460RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10461
Clavulariidae_g10462
Clavulariidae_g10463
Clavulariidae_g10464
Clavulariidae_g10465
Clavulariidae_g10466
Clavulariidae_g10467
Clavulariidae_g10468GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN
Clavulariidae_g10469
Clavulariidae_g1047RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10470
Clavulariidae_g10471DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10472DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10473SI:CH211-196P9.1-RELATED
Clavulariidae_g10474REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10475THAP DOMAIN PROTEIN
Clavulariidae_g10476EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10477
Clavulariidae_g10478REVERSE TRANSCRIPTASES
Clavulariidae_g10479SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g1048REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10480ZGC:195170
Clavulariidae_g10481
Clavulariidae_g10482PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10483ATP-DEPENDENT DNA HELICASE
Clavulariidae_g10484
Clavulariidae_g10485THAP DOMAIN PROTEIN
Clavulariidae_g10486PROTEIN CBG26694
Clavulariidae_g10487
Clavulariidae_g10488REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10489REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1049DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10490RETROTRANSPOSON
Clavulariidae_g10491RETROTRANSPOSON
Clavulariidae_g10492REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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