Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g10448 | |
Clavulariidae_g10449 | |
Clavulariidae_g1045 | MYND-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10450 | |
Clavulariidae_g10451 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10452 | RETROTRANSPOSON |
Clavulariidae_g10453 | PROTEIN CBG26694 |
Clavulariidae_g10454 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10455 | |
Clavulariidae_g10456 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10457 | PROTEIN CBG26694 |
Clavulariidae_g10458 | PROTEIN CBG26694 |
Clavulariidae_g10459 | REVERSE TRANSCRIPTASES |
Clavulariidae_g1046 | |
Clavulariidae_g10460 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10461 | |
Clavulariidae_g10462 | |
Clavulariidae_g10463 | |
Clavulariidae_g10464 | |
Clavulariidae_g10465 | |
Clavulariidae_g10466 | |
Clavulariidae_g10467 | |
Clavulariidae_g10468 | GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN |
Clavulariidae_g10469 | |
Clavulariidae_g1047 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10470 | |
Clavulariidae_g10471 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10472 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10473 | SI:CH211-196P9.1-RELATED |
Clavulariidae_g10474 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10475 | THAP DOMAIN PROTEIN |
Clavulariidae_g10476 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10477 | |
Clavulariidae_g10478 | REVERSE TRANSCRIPTASES |
Clavulariidae_g10479 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g1048 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10480 | ZGC:195170 |
Clavulariidae_g10481 | |
Clavulariidae_g10482 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10483 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g10484 | |
Clavulariidae_g10485 | THAP DOMAIN PROTEIN |
Clavulariidae_g10486 | PROTEIN CBG26694 |
Clavulariidae_g10487 | |
Clavulariidae_g10488 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10489 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1049 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10490 | RETROTRANSPOSON |
Clavulariidae_g10491 | RETROTRANSPOSON |
Clavulariidae_g10492 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |