Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g10583 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10584 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10585 | |
Clavulariidae_g10586 | ADHESION G-PROTEIN COUPLED RECEPTOR |
Clavulariidae_g10587 | ADHESION G-PROTEIN COUPLED RECEPTOR |
Clavulariidae_g10588 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g10589 | G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1059 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g10590 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10591 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g10592 | ADHESION G-PROTEIN COUPLED RECEPTOR |
Clavulariidae_g10593 | AGAP003710-PA |
Clavulariidae_g10594 | SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN |
Clavulariidae_g10595 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10596 | AGMATINE DEIMINASE-RELATED |
Clavulariidae_g10597 | 3-5 EXONUCLEASE |
Clavulariidae_g10598 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10599 | RETROTRANSPOSON |
Clavulariidae_g106 | |
Clavulariidae_g1060 | RETROTRANSPOSON |
Clavulariidae_g10600 | |
Clavulariidae_g10601 | |
Clavulariidae_g10602 | PROLYL HYDROXYLASE-RELATED |
Clavulariidae_g10603 | UNCHARACTERIZED |
Clavulariidae_g10604 | MASK PROTEIN |
Clavulariidae_g10605 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10606 | |
Clavulariidae_g10607 | LYSOSOMAL ACID LIPASE-RELATED |
Clavulariidae_g10608 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10609 | - |
Clavulariidae_g1061 | |
Clavulariidae_g10610 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10611 | POL PROTEIN |
Clavulariidae_g10612 | - |
Clavulariidae_g10613 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10614 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g10615 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10616 | PROTEIN CBG26694 |
Clavulariidae_g10617 | |
Clavulariidae_g10618 | |
Clavulariidae_g10619 | REVERSE TRANSCRIPTASES |
Clavulariidae_g1062 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g10620 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10621 | RETROTRANSPOSON |
Clavulariidae_g10622 | SI:CH211-266K2.1 |
Clavulariidae_g10623 | |
Clavulariidae_g10624 | RETROTRANSPOSON |
Clavulariidae_g10625 | |
Clavulariidae_g10626 | LD33695P |
Clavulariidae_g10627 | INTERLEUKIN-27 SUBUNIT BETA |