About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10583REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10584REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10585
Clavulariidae_g10586ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g10587ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g10588TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g10589G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1059ATP-DEPENDENT DNA HELICASE
Clavulariidae_g10590REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10591SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g10592ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g10593AGAP003710-PA
Clavulariidae_g10594SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN
Clavulariidae_g10595REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10596AGMATINE DEIMINASE-RELATED
Clavulariidae_g105973-5 EXONUCLEASE
Clavulariidae_g10598REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10599RETROTRANSPOSON
Clavulariidae_g106
Clavulariidae_g1060RETROTRANSPOSON
Clavulariidae_g10600
Clavulariidae_g10601
Clavulariidae_g10602PROLYL HYDROXYLASE-RELATED
Clavulariidae_g10603UNCHARACTERIZED
Clavulariidae_g10604MASK PROTEIN
Clavulariidae_g10605REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10606
Clavulariidae_g10607LYSOSOMAL ACID LIPASE-RELATED
Clavulariidae_g10608ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10609-
Clavulariidae_g1061
Clavulariidae_g10610REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10611POL PROTEIN
Clavulariidae_g10612-
Clavulariidae_g10613REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10614ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10615REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10616PROTEIN CBG26694
Clavulariidae_g10617
Clavulariidae_g10618
Clavulariidae_g10619REVERSE TRANSCRIPTASES
Clavulariidae_g1062PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g10620PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10621RETROTRANSPOSON
Clavulariidae_g10622SI:CH211-266K2.1
Clavulariidae_g10623
Clavulariidae_g10624RETROTRANSPOSON
Clavulariidae_g10625
Clavulariidae_g10626LD33695P
Clavulariidae_g10627INTERLEUKIN-27 SUBUNIT BETA
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