Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g10538 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON |
Clavulariidae_g10539 | METHYLOSOME PROTEIN 50 |
Clavulariidae_g1054 | |
Clavulariidae_g10540 | |
Clavulariidae_g10541 | |
Clavulariidae_g10542 | TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11 |
Clavulariidae_g10543 | BTB/POZ DOMAIN-CONTAINING |
Clavulariidae_g10544 | ANNEXIN |
Clavulariidae_g10545 | CYCLINS |
Clavulariidae_g10546 | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED |
Clavulariidae_g10547 | THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1 |
Clavulariidae_g10548 | TWO PORE CALCIUM CHANNEL PROTEIN 2 |
Clavulariidae_g10549 | CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A |
Clavulariidae_g1055 | |
Clavulariidae_g10550 | VOLTAGE-GATED POTASSIUM CHANNEL |
Clavulariidae_g10551 | VOLTAGE-GATED POTASSIUM CHANNEL |
Clavulariidae_g10552 | VOLTAGE-GATED POTASSIUM CHANNEL |
Clavulariidae_g10553 | |
Clavulariidae_g10554 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
Clavulariidae_g10555 | |
Clavulariidae_g10556 | TRANSGELIN |
Clavulariidae_g10557 | LEUCOKININ RECEPTOR-RELATED |
Clavulariidae_g10558 | PERFORIN-LIKE PROTEIN 1 |
Clavulariidae_g10559 | LYSOSOMAL ACID LIPASE-RELATED |
Clavulariidae_g1056 | RETROTRANSPOSON |
Clavulariidae_g10560 | LYSOSOMAL ACID LIPASE-RELATED |
Clavulariidae_g10561 | COPINE |
Clavulariidae_g10562 | |
Clavulariidae_g10563 | |
Clavulariidae_g10564 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g10565 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED |
Clavulariidae_g10566 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g10567 | |
Clavulariidae_g10568 | TUBBY-RELATED |
Clavulariidae_g10569 | |
Clavulariidae_g1057 | |
Clavulariidae_g10570 | SIT4 YEAST -ASSOCIATING PROTEIN-RELATED |
Clavulariidae_g10571 | |
Clavulariidae_g10572 | |
Clavulariidae_g10573 | |
Clavulariidae_g10574 | |
Clavulariidae_g10575 | |
Clavulariidae_g10576 | |
Clavulariidae_g10577 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
Clavulariidae_g10578 | ADAPTIN, ALPHA/GAMMA/EPSILON |
Clavulariidae_g10579 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
Clavulariidae_g1058 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g10580 | GERM CELL-LESS PROTEIN |
Clavulariidae_g10581 | REVERSE TRANSCRIPTASES |
Clavulariidae_g10582 |