About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10538TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON
Clavulariidae_g10539METHYLOSOME PROTEIN 50
Clavulariidae_g1054
Clavulariidae_g10540
Clavulariidae_g10541
Clavulariidae_g10542TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11
Clavulariidae_g10543BTB/POZ DOMAIN-CONTAINING
Clavulariidae_g10544ANNEXIN
Clavulariidae_g10545CYCLINS
Clavulariidae_g10546SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED
Clavulariidae_g10547THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1
Clavulariidae_g10548TWO PORE CALCIUM CHANNEL PROTEIN 2
Clavulariidae_g10549CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A
Clavulariidae_g1055
Clavulariidae_g10550VOLTAGE-GATED POTASSIUM CHANNEL
Clavulariidae_g10551VOLTAGE-GATED POTASSIUM CHANNEL
Clavulariidae_g10552VOLTAGE-GATED POTASSIUM CHANNEL
Clavulariidae_g10553
Clavulariidae_g10554N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
Clavulariidae_g10555
Clavulariidae_g10556TRANSGELIN
Clavulariidae_g10557LEUCOKININ RECEPTOR-RELATED
Clavulariidae_g10558PERFORIN-LIKE PROTEIN 1
Clavulariidae_g10559LYSOSOMAL ACID LIPASE-RELATED
Clavulariidae_g1056RETROTRANSPOSON
Clavulariidae_g10560LYSOSOMAL ACID LIPASE-RELATED
Clavulariidae_g10561COPINE
Clavulariidae_g10562
Clavulariidae_g10563
Clavulariidae_g10564DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10565LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
Clavulariidae_g10566CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10567
Clavulariidae_g10568TUBBY-RELATED
Clavulariidae_g10569
Clavulariidae_g1057
Clavulariidae_g10570SIT4 YEAST -ASSOCIATING PROTEIN-RELATED
Clavulariidae_g10571
Clavulariidae_g10572
Clavulariidae_g10573
Clavulariidae_g10574
Clavulariidae_g10575
Clavulariidae_g10576
Clavulariidae_g10577ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Clavulariidae_g10578ADAPTIN, ALPHA/GAMMA/EPSILON
Clavulariidae_g10579DUAL SPECIFICITY PROTEIN PHOSPHATASE
Clavulariidae_g1058DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10580GERM CELL-LESS PROTEIN
Clavulariidae_g10581REVERSE TRANSCRIPTASES
Clavulariidae_g10582
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