Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g10312 | EXPRESSED PROTEIN |
Clavulariidae_g10313 | |
Clavulariidae_g10314 | EXPRESSED PROTEIN |
Clavulariidae_g10315 | |
Clavulariidae_g10316 | PROTEIN CBG23764 |
Clavulariidae_g10317 | |
Clavulariidae_g10318 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10319 | |
Clavulariidae_g1032 | |
Clavulariidae_g10320 | THAP DOMAIN PROTEIN |
Clavulariidae_g10321 | |
Clavulariidae_g10322 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10323 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10324 | PROTEIN CBG26694 |
Clavulariidae_g10325 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10326 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g10327 | RETROTRANSPOSON |
Clavulariidae_g10328 | RETROTRANSPOSON |
Clavulariidae_g10329 | RETROTRANSPOSON |
Clavulariidae_g1033 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10330 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10331 | |
Clavulariidae_g10332 | |
Clavulariidae_g10333 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g10334 | SERINE/THREONINE-PROTEIN KINASE PIM |
Clavulariidae_g10335 | |
Clavulariidae_g10336 | ANKYRIN REPEAT-CONTAINING |
Clavulariidae_g10337 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g10338 | PUTATIVE-RELATED |
Clavulariidae_g10339 | |
Clavulariidae_g1034 | |
Clavulariidae_g10340 | |
Clavulariidae_g10341 | |
Clavulariidae_g10342 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10343 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10344 | |
Clavulariidae_g10345 | RETROTRANSPOSON |
Clavulariidae_g10346 | SNAC DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10347 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10348 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10349 | |
Clavulariidae_g1035 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10350 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10351 | |
Clavulariidae_g10352 | |
Clavulariidae_g10353 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10354 | REVERSE TRANSCRIPTASES |
Clavulariidae_g10355 | |
Clavulariidae_g10356 | |
Clavulariidae_g10357 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |