About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10312EXPRESSED PROTEIN
Clavulariidae_g10313
Clavulariidae_g10314EXPRESSED PROTEIN
Clavulariidae_g10315
Clavulariidae_g10316PROTEIN CBG23764
Clavulariidae_g10317
Clavulariidae_g10318REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10319
Clavulariidae_g1032
Clavulariidae_g10320THAP DOMAIN PROTEIN
Clavulariidae_g10321
Clavulariidae_g10322DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10323REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10324PROTEIN CBG26694
Clavulariidae_g10325REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10326L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g10327RETROTRANSPOSON
Clavulariidae_g10328RETROTRANSPOSON
Clavulariidae_g10329RETROTRANSPOSON
Clavulariidae_g1033REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10330REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10331
Clavulariidae_g10332
Clavulariidae_g10333DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10334SERINE/THREONINE-PROTEIN KINASE PIM
Clavulariidae_g10335
Clavulariidae_g10336ANKYRIN REPEAT-CONTAINING
Clavulariidae_g10337DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10338PUTATIVE-RELATED
Clavulariidae_g10339
Clavulariidae_g1034
Clavulariidae_g10340
Clavulariidae_g10341
Clavulariidae_g10342ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10343DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10344
Clavulariidae_g10345RETROTRANSPOSON
Clavulariidae_g10346SNAC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10347PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10348REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10349
Clavulariidae_g1035RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10350C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10351
Clavulariidae_g10352
Clavulariidae_g10353ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10354REVERSE TRANSCRIPTASES
Clavulariidae_g10355
Clavulariidae_g10356
Clavulariidae_g10357REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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