About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10268PROTEIN CBG26694
Clavulariidae_g10269
Clavulariidae_g1027PROTEIN CBG26694
Clavulariidae_g10270UNCHARACTERIZED
Clavulariidae_g10271
Clavulariidae_g10272RETROTRANSPOSON
Clavulariidae_g10273
Clavulariidae_g10274
Clavulariidae_g10275CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10276CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10277UNCHARACTERIZED
Clavulariidae_g10278
Clavulariidae_g10279HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g1028TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g10280DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10281
Clavulariidae_g10282
Clavulariidae_g10283RETROTRANSPOSON
Clavulariidae_g10284COLLAGEN ALPHA
Clavulariidae_g10285
Clavulariidae_g10286
Clavulariidae_g10287PROTEIN CBG23764
Clavulariidae_g10288
Clavulariidae_g10289
Clavulariidae_g1029
Clavulariidae_g10290
Clavulariidae_g10291
Clavulariidae_g10292UNCHARACTERIZED
Clavulariidae_g10293THAP DOMAIN PROTEIN
Clavulariidae_g10294RETROTRANSPOSON
Clavulariidae_g10295RETROTRANSPOSON
Clavulariidae_g10296RETROTRANSPOSON
Clavulariidae_g10297
Clavulariidae_g10298EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10299
Clavulariidae_g103
Clavulariidae_g1030SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g10300
Clavulariidae_g10301EXPRESSED PROTEIN
Clavulariidae_g10302PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10303DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED
Clavulariidae_g10304
Clavulariidae_g10305ELONGATION FACTOR 1 ALPHA
Clavulariidae_g10306L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g10307REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10308
Clavulariidae_g10309DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g1031EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g10310
Clavulariidae_g10311SGNH_HYDRO DOMAIN-CONTAINING PROTEIN
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