About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10132CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10133
Clavulariidae_g10134
Clavulariidae_g10135
Clavulariidae_g10136HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10137ATP-DEPENDENT DNA HELICASE
Clavulariidae_g10138ATP-DEPENDENT DNA HELICASE
Clavulariidae_g10139
Clavulariidae_g1014INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g10140REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10141ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10142RETROTRANSPOSON
Clavulariidae_g10143RETROTRANSPOSON
Clavulariidae_g10144RETROTRANSPOSON
Clavulariidae_g10145
Clavulariidae_g10146EXPRESSED PROTEIN
Clavulariidae_g10147
Clavulariidae_g10148
Clavulariidae_g10149
Clavulariidae_g1015PROTEIN CBG23764
Clavulariidae_g10150VERTNIN
Clavulariidae_g10151
Clavulariidae_g10152
Clavulariidae_g10153REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10154
Clavulariidae_g10155
Clavulariidae_g10156REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10157
Clavulariidae_g10158
Clavulariidae_g10159
Clavulariidae_g1016ATP-DEPENDENT DNA HELICASE
Clavulariidae_g10160-
Clavulariidae_g10161
Clavulariidae_g10162UNCHARACTERIZED
Clavulariidae_g10163
Clavulariidae_g10164SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g10165AGAP005574-PA
Clavulariidae_g10166
Clavulariidae_g10167
Clavulariidae_g10168SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g10169
Clavulariidae_g1017
Clavulariidae_g10170ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10171KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g10172C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10173CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10174
Clavulariidae_g10175
Clavulariidae_g1017652 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g10177-
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