Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g10402 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10403 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10404 | PROTEIN CBG23806 |
Clavulariidae_g10405 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10406 | RETROTRANSPOSON |
Clavulariidae_g10407 | TRANSPOSASE-RELATED |
Clavulariidae_g10408 | |
Clavulariidae_g10409 | |
Clavulariidae_g1041 | |
Clavulariidae_g10410 | |
Clavulariidae_g10411 | RETROTRANSPOSON |
Clavulariidae_g10412 | |
Clavulariidae_g10413 | ZGC:195170 |
Clavulariidae_g10414 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10415 | |
Clavulariidae_g10416 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10417 | RETROTRANSPOSON |
Clavulariidae_g10418 | RETROTRANSPOSON |
Clavulariidae_g10419 | |
Clavulariidae_g1042 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10420 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g10421 | |
Clavulariidae_g10422 | |
Clavulariidae_g10423 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10424 | |
Clavulariidae_g10425 | |
Clavulariidae_g10426 | PROTEIN CBG26694 |
Clavulariidae_g10427 | |
Clavulariidae_g10428 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10429 | |
Clavulariidae_g1043 | UBIQUITIN-PROTEIN LIGASE E3C |
Clavulariidae_g10430 | MADF DOMAIN TRANSCRIPTION FACTOR |
Clavulariidae_g10431 | UNCHARACTERIZED |
Clavulariidae_g10432 | PROTEIN CBG26694 |
Clavulariidae_g10433 | |
Clavulariidae_g10434 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Clavulariidae_g10435 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10436 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g10437 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10438 | RETROTRANSPOSON |
Clavulariidae_g10439 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1044 | EXPRESSED PROTEIN |
Clavulariidae_g10440 | REVERSE TRANSCRIPTASE |
Clavulariidae_g10441 | |
Clavulariidae_g10442 | |
Clavulariidae_g10443 | |
Clavulariidae_g10444 | |
Clavulariidae_g10445 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Clavulariidae_g10446 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10447 | ATP-DEPENDENT DNA HELICASE |