About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10402PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10403EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10404PROTEIN CBG23806
Clavulariidae_g10405REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10406RETROTRANSPOSON
Clavulariidae_g10407TRANSPOSASE-RELATED
Clavulariidae_g10408
Clavulariidae_g10409
Clavulariidae_g1041
Clavulariidae_g10410
Clavulariidae_g10411RETROTRANSPOSON
Clavulariidae_g10412
Clavulariidae_g10413ZGC:195170
Clavulariidae_g10414REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10415
Clavulariidae_g10416REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10417RETROTRANSPOSON
Clavulariidae_g10418RETROTRANSPOSON
Clavulariidae_g10419
Clavulariidae_g1042ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10420DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10421
Clavulariidae_g10422
Clavulariidae_g10423ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10424
Clavulariidae_g10425
Clavulariidae_g10426PROTEIN CBG26694
Clavulariidae_g10427
Clavulariidae_g10428PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10429
Clavulariidae_g1043UBIQUITIN-PROTEIN LIGASE E3C
Clavulariidae_g10430MADF DOMAIN TRANSCRIPTION FACTOR
Clavulariidae_g10431UNCHARACTERIZED
Clavulariidae_g10432PROTEIN CBG26694
Clavulariidae_g10433
Clavulariidae_g10434PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Clavulariidae_g10435PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10436F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10437PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10438RETROTRANSPOSON
Clavulariidae_g10439ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1044EXPRESSED PROTEIN
Clavulariidae_g10440REVERSE TRANSCRIPTASE
Clavulariidae_g10441
Clavulariidae_g10442
Clavulariidae_g10443
Clavulariidae_g10444
Clavulariidae_g1044552 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g10446REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10447ATP-DEPENDENT DNA HELICASE
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