About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10493ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10494ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10495
Clavulariidae_g10496RETROTRANSPOSON
Clavulariidae_g10497DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10498ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10499CATALASE
Clavulariidae_g105REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1050PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10500METHYL-CPG-BINDING PROTEIN
Clavulariidae_g10501PEPTIDYLPROLYL ISOMERASE
Clavulariidae_g10502DICKKOPF3-LIKE 3
Clavulariidae_g10503DICKKOPF3-LIKE 3
Clavulariidae_g10504
Clavulariidae_g10505
Clavulariidae_g10506PROTEIN CBG26694
Clavulariidae_g10507OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g10508PX SERINE/THREONINE KINASE PXK
Clavulariidae_g10509SYNAPTOTAGMIN
Clavulariidae_g1051PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10510SYNAPTOTAGMIN
Clavulariidae_g10511SYNAPTOTAGMIN
Clavulariidae_g10512CYCLIN-DEPENDENT KINASE INHIBITOR 1
Clavulariidae_g10513
Clavulariidae_g10514DEOXYRIBOSE-PHOSPHATE ALDOLASE
Clavulariidae_g10515LD44813P
Clavulariidae_g10516JNK-INTERACTING PROTEIN 1-LIKE PROTEIN
Clavulariidae_g10517DEP DOMAIN-CONTAINING
Clavulariidae_g10518CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
Clavulariidae_g10519CALCIUM-RESPONSIVE TRANSCRIPTION FACTOR
Clavulariidae_g1052RETROTRANSPOSON
Clavulariidae_g10520ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10521RIBOSOMAL PROTEIN L7AE FAMILY MEMBER
Clavulariidae_g10522TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13
Clavulariidae_g10523RETROTRANSPOSON
Clavulariidae_g10524
Clavulariidae_g10525
Clavulariidae_g10526AROMATIC AMINO ACID HYDROXYLASE
Clavulariidae_g10527SOX TRANSCRIPTION FACTOR
Clavulariidae_g10528DIACYLGLYCEROL KINASE
Clavulariidae_g10529MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
Clavulariidae_g1053
Clavulariidae_g10530ACTIN
Clavulariidae_g10531BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
Clavulariidae_g10532HISTONE ACETYLTRANSFERASE
Clavulariidae_g10533HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g10534
Clavulariidae_g10535CYCLIN
Clavulariidae_g10536TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Clavulariidae_g10537
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