About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12202UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g12203ENOLASE SUPERFAMILY, MANDELATE RACEMASE
Clavulariidae_g12204SRR1-LIKE PROTEIN
Clavulariidae_g12205RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED
Clavulariidae_g12206NUCLEAR PORE COMPLEX PROTEIN NUP
Clavulariidae_g12207SYNTAXIN
Clavulariidae_g12208C-TYPE LECTIN DOMAIN FAMILY 12 MEMBER A-RELATED
Clavulariidae_g12209OXIDASE/PEROXIDASE
Clavulariidae_g1221COLLAGEN ALPHA
Clavulariidae_g12210TOLL-LIKE RECEPTOR
Clavulariidae_g12211TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED
Clavulariidae_g12212CENTROSOMAL PROTEIN 2
Clavulariidae_g12213RAS-RELATED PROTEIN RAB
Clavulariidae_g1221440S RIBOSOMAL PROTEIN S7
Clavulariidae_g12215ANKYRIN REPEAT-CONTAINING
Clavulariidae_g12216PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
Clavulariidae_g12217CDK5 AND ABL1 ENZYME SUBSTRATE 1
Clavulariidae_g12218PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
Clavulariidae_g12219PEPTIDYLPROLYL ISOMERASE
Clavulariidae_g1222
Clavulariidae_g12220REVERSE TRANSCRIPTASES
Clavulariidae_g12221COILED-COIL DOMAIN-CONTAINING PROTEIN 178
Clavulariidae_g12222ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Clavulariidae_g12223REVERSE TRANSCRIPTASES
Clavulariidae_g12224INTELECTIN
Clavulariidae_g12225REVERSE TRANSCRIPTASES
Clavulariidae_g12226REVERSE TRANSCRIPTASES
Clavulariidae_g12227-
Clavulariidae_g12228KINESIN-LIKE PROTEIN KLP-3
Clavulariidae_g12229ATP-DEPENDENT DNA HELICASE
Clavulariidae_g1223DNA POLYMERASE
Clavulariidae_g12230MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Clavulariidae_g12231C-TYPE LECTIN DOMAIN FAMILY 20 MEMBER A-RELATED
Clavulariidae_g12232ENDONUCLEASE-RELATED
Clavulariidae_g12233RETROTRANSPOSON
Clavulariidae_g12234MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Clavulariidae_g12235
Clavulariidae_g122363-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED
Clavulariidae_g12237
Clavulariidae_g12238ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1
Clavulariidae_g12239UNCHARACTERIZED
Clavulariidae_g1224CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g12240UNCHARACTERIZED
Clavulariidae_g12241FLAP ENDONUCLEASE FAMILY MEMBER
Clavulariidae_g12242
Clavulariidae_g12243
Clavulariidae_g12244MAKORIN-RELATED
Clavulariidae_g12245TGF-BETA FAMILY
Clavulariidae_g12246F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g12247MIDASIN-RELATED
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