Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g12428 | |
Clavulariidae_g12429 | |
Clavulariidae_g1243 | |
Clavulariidae_g12430 | RETROTRANSPOSON |
Clavulariidae_g12431 | |
Clavulariidae_g12432 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12433 | |
Clavulariidae_g12434 | ZGC:195170 |
Clavulariidae_g12435 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g12436 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12437 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g12438 | |
Clavulariidae_g12439 | ENDONUCLEASE-RELATED |
Clavulariidae_g1244 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12440 | POL PROTEIN |
Clavulariidae_g12441 | |
Clavulariidae_g12442 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g12443 | ZGC:195170 |
Clavulariidae_g12444 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g12445 | |
Clavulariidae_g12446 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
Clavulariidae_g12447 | |
Clavulariidae_g12448 | |
Clavulariidae_g12449 | AKT1 SUBSTRATE 1 PROTEIN |
Clavulariidae_g1245 | |
Clavulariidae_g12450 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
Clavulariidae_g12451 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12452 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12453 | |
Clavulariidae_g12454 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
Clavulariidae_g12455 | PROTEIN CBG26694 |
Clavulariidae_g12456 | |
Clavulariidae_g12457 | |
Clavulariidae_g12458 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g12459 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1246 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12460 | |
Clavulariidae_g12461 | POL PROTEIN |
Clavulariidae_g12462 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g12463 | |
Clavulariidae_g12464 | |
Clavulariidae_g12465 | GPI-ANCHORED PROTEIN P137 |
Clavulariidae_g12466 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12467 | SUPPRESSOR OF VARIEGATION 4-20-RELATED |
Clavulariidae_g12468 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12469 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1247 | EXPRESSED PROTEIN |
Clavulariidae_g12470 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
Clavulariidae_g12471 | |
Clavulariidae_g12472 | PROTEIN CBG26694 |