About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12428
Clavulariidae_g12429
Clavulariidae_g1243
Clavulariidae_g12430RETROTRANSPOSON
Clavulariidae_g12431
Clavulariidae_g12432C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12433
Clavulariidae_g12434ZGC:195170
Clavulariidae_g12435SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g12436PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12437L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g12438
Clavulariidae_g12439ENDONUCLEASE-RELATED
Clavulariidae_g1244REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12440POL PROTEIN
Clavulariidae_g12441
Clavulariidae_g12442TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g12443ZGC:195170
Clavulariidae_g12444SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g12445
Clavulariidae_g12446TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Clavulariidae_g12447
Clavulariidae_g12448
Clavulariidae_g12449AKT1 SUBSTRATE 1 PROTEIN
Clavulariidae_g1245
Clavulariidae_g12450TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Clavulariidae_g12451EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12452REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12453
Clavulariidae_g12454TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Clavulariidae_g12455PROTEIN CBG26694
Clavulariidae_g12456
Clavulariidae_g12457
Clavulariidae_g12458TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g12459REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1246DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12460
Clavulariidae_g12461POL PROTEIN
Clavulariidae_g12462CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g12463
Clavulariidae_g12464
Clavulariidae_g12465GPI-ANCHORED PROTEIN P137
Clavulariidae_g12466ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12467SUPPRESSOR OF VARIEGATION 4-20-RELATED
Clavulariidae_g12468REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12469ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1247EXPRESSED PROTEIN
Clavulariidae_g12470THREE PRIME REPAIR EXONUCLEASE 1, 2
Clavulariidae_g12471
Clavulariidae_g12472PROTEIN CBG26694
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