Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g12518 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12519 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1252 | RETROTRANSPOSON |
Clavulariidae_g12520 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g12521 | INTELECTIN |
Clavulariidae_g12522 | |
Clavulariidae_g12523 | |
Clavulariidae_g12524 | |
Clavulariidae_g12525 | COLLAGEN ALPHA |
Clavulariidae_g12526 | |
Clavulariidae_g12527 | |
Clavulariidae_g12528 | PROTEIN CBG26694 |
Clavulariidae_g12529 | PROTEIN CBG26694 |
Clavulariidae_g1253 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12530 | REVERSE TRANSCRIPTASES |
Clavulariidae_g12531 | REVERSE TRANSCRIPTASES |
Clavulariidae_g12532 | |
Clavulariidae_g12533 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12534 | KRAB DOMAIN C2H2 ZINC FINGER |
Clavulariidae_g12535 | FLAVIN MONOAMINE OXIDASE |
Clavulariidae_g12536 | |
Clavulariidae_g12537 | |
Clavulariidae_g12538 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12539 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
Clavulariidae_g1254 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12540 | |
Clavulariidae_g12541 | TRANSCRIPTION ELONGATION FACTOR A |
Clavulariidae_g12542 | MONOCARBOXYLATE TRANSPORTER |
Clavulariidae_g12543 | BITESIZE, ISOFORM I |
Clavulariidae_g12544 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
Clavulariidae_g12545 | UNCHARACTERIZED |
Clavulariidae_g12546 | |
Clavulariidae_g12547 | DIMETHYLADENOSINE TRANSFERASE |
Clavulariidae_g12548 | |
Clavulariidae_g12549 | UNCHARACTERIZED |
Clavulariidae_g1255 | PROTEIN CBG23806 |
Clavulariidae_g12550 | PATCHED-RELATED |
Clavulariidae_g12551 | 5'-NUCLEOTIDASE-RELATED |
Clavulariidae_g12552 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
Clavulariidae_g12553 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12554 | UNCHARACTERIZED |
Clavulariidae_g12555 | DNA-BINDING PROTEIN SATB FAMILY MEMBER |
Clavulariidae_g12556 | ANDROGLOBIN |
Clavulariidae_g12557 | EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 |
Clavulariidae_g12558 | |
Clavulariidae_g12559 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
Clavulariidae_g1256 | |
Clavulariidae_g12560 | |
Clavulariidae_g12561 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
Clavulariidae_g12562 |