About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12518DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12519ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1252RETROTRANSPOSON
Clavulariidae_g12520INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g12521INTELECTIN
Clavulariidae_g12522
Clavulariidae_g12523
Clavulariidae_g12524
Clavulariidae_g12525COLLAGEN ALPHA
Clavulariidae_g12526
Clavulariidae_g12527
Clavulariidae_g12528PROTEIN CBG26694
Clavulariidae_g12529PROTEIN CBG26694
Clavulariidae_g1253DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12530REVERSE TRANSCRIPTASES
Clavulariidae_g12531REVERSE TRANSCRIPTASES
Clavulariidae_g12532
Clavulariidae_g12533REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12534KRAB DOMAIN C2H2 ZINC FINGER
Clavulariidae_g12535FLAVIN MONOAMINE OXIDASE
Clavulariidae_g12536
Clavulariidae_g12537
Clavulariidae_g12538ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12539TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Clavulariidae_g1254PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12540
Clavulariidae_g12541TRANSCRIPTION ELONGATION FACTOR A
Clavulariidae_g12542MONOCARBOXYLATE TRANSPORTER
Clavulariidae_g12543BITESIZE, ISOFORM I
Clavulariidae_g125445'-NUCLEOTIDASE DOMAIN-CONTAINING
Clavulariidae_g12545UNCHARACTERIZED
Clavulariidae_g12546
Clavulariidae_g12547DIMETHYLADENOSINE TRANSFERASE
Clavulariidae_g12548
Clavulariidae_g12549UNCHARACTERIZED
Clavulariidae_g1255PROTEIN CBG23806
Clavulariidae_g12550PATCHED-RELATED
Clavulariidae_g125515'-NUCLEOTIDASE-RELATED
Clavulariidae_g12552EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
Clavulariidae_g12553PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12554UNCHARACTERIZED
Clavulariidae_g12555DNA-BINDING PROTEIN SATB FAMILY MEMBER
Clavulariidae_g12556ANDROGLOBIN
Clavulariidae_g12557EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1
Clavulariidae_g12558
Clavulariidae_g12559POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g1256
Clavulariidae_g12560
Clavulariidae_g12561POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g12562
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