About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12473TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g12474ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12475REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12476
Clavulariidae_g12477
Clavulariidae_g12478PROTEIN CBG23764
Clavulariidae_g12479COLLAGEN ALPHA
Clavulariidae_g1248HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Clavulariidae_g12480
Clavulariidae_g12481PROTEIN CBG26694
Clavulariidae_g12482PROTEIN CBG26694
Clavulariidae_g12483PROTEIN CBG26694
Clavulariidae_g12484PROTEIN CBG26694
Clavulariidae_g12485ANTHRAX TOXIN RECEPTOR
Clavulariidae_g12486
Clavulariidae_g12487PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
Clavulariidae_g12488CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g12489CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g1249
Clavulariidae_g12490
Clavulariidae_g12491
Clavulariidae_g12492ZGC:195170
Clavulariidae_g12493
Clavulariidae_g12494
Clavulariidae_g12495OS02G0260700 PROTEIN
Clavulariidae_g12496PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
Clavulariidae_g12497ANTHRAX TOXIN RECEPTOR
Clavulariidae_g12498PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12499KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g125REVERSE TRANSCRIPTASES
Clavulariidae_g1250RETROTRANSPOSON
Clavulariidae_g12500
Clavulariidae_g12501REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12502RAPSYN-RELATED
Clavulariidae_g12503
Clavulariidae_g12504
Clavulariidae_g12505CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Clavulariidae_g12506TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g12507TRANSPOSASE
Clavulariidae_g12508
Clavulariidae_g12509
Clavulariidae_g1251RETROTRANSPOSON
Clavulariidae_g12510REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12511BONUS, ISOFORM C-RELATED
Clavulariidae_g12512IONOTROPIC GLUTAMATE RECEPTOR
Clavulariidae_g12513HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
Clavulariidae_g12514TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12
Clavulariidae_g12515PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12516RETROTRANSPOSON
Clavulariidae_g12517PROTEIN CBG26694
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