About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12608SNF2/RAD54 FAMILY MEMBER
Clavulariidae_g12609WD40 REPEAT PROTEIN
Clavulariidae_g1261SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g1261039S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL
Clavulariidae_g12611TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12612
Clavulariidae_g12613ACYL-COA DEHYDROGENASE
Clavulariidae_g12614PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
Clavulariidae_g12615SPINSTER
Clavulariidae_g12616SEPTIN
Clavulariidae_g12617TRANSGELIN
Clavulariidae_g12618CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Clavulariidae_g12619PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED
Clavulariidae_g1262DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12620PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO
Clavulariidae_g12621
Clavulariidae_g12622CARBONIC ANHYDRASE
Clavulariidae_g12623RING FINGER PROTEIN 25
Clavulariidae_g12624POTASSIUM CHANNEL, SUBFAMILY K
Clavulariidae_g12625TRANSCRIPTION ELONGATION FACTOR SPT6
Clavulariidae_g12626DYNACTIN 1-RELATED MICROTUBULE-BINDING
Clavulariidae_g12627POTE ANKYRIN DOMAIN
Clavulariidae_g12628SERUM RESPONSE FACTOR-BINDING
Clavulariidae_g12629
Clavulariidae_g1263TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
Clavulariidae_g12630SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7
Clavulariidae_g12631SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7
Clavulariidae_g12632
Clavulariidae_g12633BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
Clavulariidae_g12634TUBULIN
Clavulariidae_g12635SYNTAXIN
Clavulariidae_g12636
Clavulariidae_g12637MYOTONIC DYSTROPHY S/T KINASE-RELATED
Clavulariidae_g12638MITOGEN-ACTIVATED PROTEIN KINASE
Clavulariidae_g12639MALATE AND LACTATE DEHYDROGENASE
Clavulariidae_g1264PROTEIN CBG23764
Clavulariidae_g12640
Clavulariidae_g12641POLYCYSTIN-1
Clavulariidae_g12642PROTEASE M14 CARBOXYPEPTIDASE
Clavulariidae_g12643TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Clavulariidae_g12644
Clavulariidae_g12645
Clavulariidae_g12646
Clavulariidae_g12647
Clavulariidae_g12648
Clavulariidae_g12649
Clavulariidae_g1265INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g12650
Clavulariidae_g12651ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13
Clavulariidae_g12652CDC45-RELATED PROTEIN
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