About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12699DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 1
Clavulariidae_g127PROTEIN CBG26694
Clavulariidae_g1270PLASMINOGEN-RELATED
Clavulariidae_g12700PEROXISOMAL SARCOSINE OXIDASE
Clavulariidae_g12701EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5
Clavulariidae_g12702IRON-SULFUR CLUSTER CO-CHAPERONE PROTEIN HSCB
Clavulariidae_g12703ACYL-COA DEHYDROGENASE
Clavulariidae_g12704ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 2 PROTEIN FON -RELATED
Clavulariidae_g12705OXYGENASE-RELATED
Clavulariidae_g12706OPTICIN
Clavulariidae_g12707CLATHRIN HEAVY CHAIN RELATED
Clavulariidae_g12708G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP
Clavulariidae_g12709CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
Clavulariidae_g1271
Clavulariidae_g12710CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
Clavulariidae_g12711C3H1-TYPE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g12712RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
Clavulariidae_g12713MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED
Clavulariidae_g12714LIM/HOMEOBOX PROTEIN LHX
Clavulariidae_g12715UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN
Clavulariidae_g12716
Clavulariidae_g12717MAX DIMERIZATION, MAD
Clavulariidae_g12718E3 UBIQUITIN-PROTEIN LIGASE HECTD4-RELATED
Clavulariidae_g12719ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 1
Clavulariidae_g1272ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g12720MITOGEN-ACTIVATED PROTEIN KINASE
Clavulariidae_g12721LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN
Clavulariidae_g12722PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN
Clavulariidae_g12723
Clavulariidae_g12724UNCHARACTERIZED
Clavulariidae_g12725UNCHARACTERIZED
Clavulariidae_g12726PHOSPHOTRIESTERASE-RELATED
Clavulariidae_g12727PHOSPHOTRIESTERASE-RELATED
Clavulariidae_g12728PROPERDIN
Clavulariidae_g12729
Clavulariidae_g1273PROPERDIN
Clavulariidae_g12730
Clavulariidae_g12731PROPERDIN
Clavulariidae_g12732PROPERDIN
Clavulariidae_g12733
Clavulariidae_g12734
Clavulariidae_g12735PHOSPHATIDYLSERINE DECARBOXYLASE
Clavulariidae_g12736ELONGATION FACTOR TU-RELATED
Clavulariidae_g12737CRUMBS FAMILY MEMBER
Clavulariidae_g12738GLYCOSYL HYDROLASE-RELATED
Clavulariidae_g12739
Clavulariidae_g1274REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12740NUCLEASE-RELATED
Clavulariidae_g12741DENSITY-REGULATED PROTEIN HOMOLOG
Clavulariidae_g12742THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED
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