About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12789FTP DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1279
Clavulariidae_g12790FTP DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12791TECTONIC FAMILY MEMBER
Clavulariidae_g12792HEPATOCYTE NUCLEAR FACTOR 1
Clavulariidae_g12793SEPTIN
Clavulariidae_g12794UNCHARACTERIZED
Clavulariidae_g12795UNCHARACTERIZED
Clavulariidae_g12796REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
Clavulariidae_g12797CHONDROITIN SYNTHASE
Clavulariidae_g12798UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE
Clavulariidae_g12799MYOSIN
Clavulariidae_g128
Clavulariidae_g1280SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g12800DEHYDROGENASES, SHORT CHAIN
Clavulariidae_g12801
Clavulariidae_g12802ELECTRON TRANSPORT OXIDOREDUCTASE
Clavulariidae_g12803TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g12804TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g12805IP22168P
Clavulariidae_g12806SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT
Clavulariidae_g12807
Clavulariidae_g12808MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13
Clavulariidae_g12809CARBOHYDRATE BINDING DOMAIN CONTAINING PROTEIN
Clavulariidae_g1281
Clavulariidae_g12810P2X PURINOCEPTOR
Clavulariidae_g12811NITRIC OXIDE SYNTHASE OXYGENASE
Clavulariidae_g12812
Clavulariidae_g12813
Clavulariidae_g12814TRNA DIMETHYLALLYLTRANSFERASE
Clavulariidae_g12815UNCHARACTERIZED
Clavulariidae_g12816
Clavulariidae_g12817NITRIC OXIDE SYNTHASE OXYGENASE
Clavulariidae_g12818
Clavulariidae_g12819TRNA DIMETHYLALLYLTRANSFERASE
Clavulariidae_g1282
Clavulariidae_g12820UNCHARACTERIZED
Clavulariidae_g12821
Clavulariidae_g12822
Clavulariidae_g12823
Clavulariidae_g12824
Clavulariidae_g12825
Clavulariidae_g12826G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g12827DIMETHYLANILINE MONOOXYGENASE
Clavulariidae_g12828DIMETHYLANILINE MONOOXYGENASE
Clavulariidae_g12829CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Clavulariidae_g1283PROTEIN CBG26694
Clavulariidae_g12830PYRUVATE DEHYDROGENASE KINASE
Clavulariidae_g12831ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
Clavulariidae_g12832WD40 REPEAT PROTEIN 12, 37
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