Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g12743 | ZINC FINGER PROTEIN DZIP1 |
| Clavulariidae_g12744 | CENTROSOMAL PROTEIN 2 |
| Clavulariidae_g12745 | |
| Clavulariidae_g12746 | |
| Clavulariidae_g12747 | POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 |
| Clavulariidae_g12748 | DNA-REPAIR PROTEIN XRCC1 |
| Clavulariidae_g12749 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 31-RELATED |
| Clavulariidae_g1275 | PROPERDIN |
| Clavulariidae_g12750 | FOIE GRAS |
| Clavulariidae_g12751 | TRAF-TYPE ZINC FINGER PROTEIN-RELATED |
| Clavulariidae_g12752 | SACSIN |
| Clavulariidae_g12753 | |
| Clavulariidae_g12754 | |
| Clavulariidae_g12755 | |
| Clavulariidae_g12756 | PRE-MRNA PROCESSING PROTEIN PRP39-RELATED |
| Clavulariidae_g12757 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| Clavulariidae_g12758 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
| Clavulariidae_g12759 | ES-2 PROTEIN - RELATED |
| Clavulariidae_g1276 | PROPERDIN |
| Clavulariidae_g12760 | NUCLEOREDOXIN |
| Clavulariidae_g12761 | PROTEIN ANKUB1 |
| Clavulariidae_g12762 | TUDOR DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g12763 | MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED |
| Clavulariidae_g12764 | DAUER UP-REGULATED-RELATED |
| Clavulariidae_g12765 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Clavulariidae_g12766 | COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL |
| Clavulariidae_g12767 | 60S RIBOSOMAL PROTEIN L6 |
| Clavulariidae_g12768 | CELL DIVISION CYCLE 16,23,27 |
| Clavulariidae_g12769 | PEPTIDYL-TRNA HYDROLASE 2 |
| Clavulariidae_g1277 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g12770 | S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE |
| Clavulariidae_g12771 | RIBONUCLEASE P_MRP PROTEIN SUBUNIT POP5 |
| Clavulariidae_g12772 | |
| Clavulariidae_g12773 | PROLINE OXIDASE |
| Clavulariidae_g12774 | PROLINE OXIDASE |
| Clavulariidae_g12775 | FRINGE-RELATED |
| Clavulariidae_g12776 | |
| Clavulariidae_g12777 | RIBOSOMAL PROTEIN S6 KINASE |
| Clavulariidae_g12778 | |
| Clavulariidae_g12779 | PHOSPHOGLYCERATE MUTASE-RELATED |
| Clavulariidae_g1278 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g12780 | PTD012 PROTEIN |
| Clavulariidae_g12781 | |
| Clavulariidae_g12782 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| Clavulariidae_g12783 | |
| Clavulariidae_g12784 | |
| Clavulariidae_g12785 | WD-40 REPEAT PROTEIN |
| Clavulariidae_g12786 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| Clavulariidae_g12787 | FTP DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g12788 | FTP DOMAIN-CONTAINING PROTEIN |
