About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12879
Clavulariidae_g1288
Clavulariidae_g12880ATP-DEPENDENT DNA HELICASE
Clavulariidae_g12881
Clavulariidae_g12882ZINC FINGER PROTEIN
Clavulariidae_g12883
Clavulariidae_g12884
Clavulariidae_g12885FYVE-FINGER-CONTAINING RAB5 EFFECTOR PROTEIN RABENOSYN-5-RELATED
Clavulariidae_g12886PROKARYOTIC DNA TOPOISOMERASE
Clavulariidae_g12887U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN
Clavulariidae_g12888LD33804P
Clavulariidae_g12889RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1289DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12890RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12891TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g12892SERINE INCORPORATOR
Clavulariidae_g12893KELCH PROTEIN
Clavulariidae_g12894PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE
Clavulariidae_g12895ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g12896RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12897RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12898
Clavulariidae_g12899RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g129
Clavulariidae_g1290DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12900TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g12901SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
Clavulariidae_g12902RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12903RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12904UBIQUITIN FUSION DEGRADATON PROTEIN 1
Clavulariidae_g12905UNCHARACTERIZED
Clavulariidae_g12906TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED
Clavulariidae_g12907SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED
Clavulariidae_g12908RNA HELICASE
Clavulariidae_g1290914-3-3 PROTEIN
Clavulariidae_g1291
Clavulariidae_g12910GAMETOGENETIN-BINDING PROTEIN 2
Clavulariidae_g12911RAS-RELATED PROTEIN RAB
Clavulariidae_g12912
Clavulariidae_g12913KINESIN LIGHT CHAIN
Clavulariidae_g12914ATP-DEPENDENT DNA HELICASE
Clavulariidae_g12915TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Clavulariidae_g12916RAPSYN-RELATED
Clavulariidae_g12917SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g12918REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12919
Clavulariidae_g1292INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g1292060S RIBOSOMAL PROTEIN L23A
Clavulariidae_g12921
Clavulariidae_g12922TROPOMYOSIN
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