About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12969C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1297IQ DOMAIN-CONTAINING PROTEIN D
Clavulariidae_g12970UNCHARACTERIZED
Clavulariidae_g12971UNCHARACTERIZED
Clavulariidae_g12972REVERSE TRANSCRIPTASES
Clavulariidae_g12973ATP-DEPENDENT DNA HELICASE
Clavulariidae_g12974LD33695P
Clavulariidae_g12975OS01G0750400 PROTEIN
Clavulariidae_g12976ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g12977PHOSPHOENOLPYRUVATE CARBOXYLASE
Clavulariidae_g12978ZINC FINGER PROTEIN
Clavulariidae_g12979LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED
Clavulariidae_g1298
Clavulariidae_g12980INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g12981FUKUTIN RELATED PROTEIN
Clavulariidae_g12982RETROTRANSPOSON
Clavulariidae_g12983BONE MARROW PROTEOGLYCAN
Clavulariidae_g12984FUKUTIN RELATED PROTEIN
Clavulariidae_g12985UNCHARACTERIZED
Clavulariidae_g12986
Clavulariidae_g12987GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2
Clavulariidae_g12988GLUTATHIONE S-TRANSFERASE KAPPA
Clavulariidae_g12989REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1299
Clavulariidae_g12990
Clavulariidae_g12991LIPOXYGENASE
Clavulariidae_g12992LIPOXYGENASE
Clavulariidae_g12993AMINO ACID TRANSPORTER
Clavulariidae_g12994TRANSIENT RECEPTOR POTENTIAL CHANNEL
Clavulariidae_g12995RETROTRANSPOSON
Clavulariidae_g12996
Clavulariidae_g12997PROTEIN FLATTOP
Clavulariidae_g12998UNCHARACTERIZED
Clavulariidae_g12999
Clavulariidae_g13
Clavulariidae_g130REVERSE TRANSCRIPTASES
Clavulariidae_g1300UNCHARACTERIZED
Clavulariidae_g13000
Clavulariidae_g13001
Clavulariidae_g13002
Clavulariidae_g13003REVERSE TRANSCRIPTASE
Clavulariidae_g13004PROTEIN CBG26694
Clavulariidae_g13005
Clavulariidae_g13006DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13007PROTEIN CBG26694
Clavulariidae_g13008PROTEIN CBG26694
Clavulariidae_g13009
Clavulariidae_g1301
Clavulariidae_g13010ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13011AGAP005574-PA
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