Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g13058 | |
| Clavulariidae_g13059 | |
| Clavulariidae_g1306 | |
| Clavulariidae_g13060 | |
| Clavulariidae_g13061 | |
| Clavulariidae_g13062 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13063 | KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE |
| Clavulariidae_g13064 | PX DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13065 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13066 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13067 | RETROTRANSPOSON |
| Clavulariidae_g13068 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
| Clavulariidae_g13069 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1307 | |
| Clavulariidae_g13070 | |
| Clavulariidae_g13071 | |
| Clavulariidae_g13072 | OSJNBA0013A04.12 PROTEIN |
| Clavulariidae_g13073 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13074 | HEAT SHOCK PROTEIN 70KDA |
| Clavulariidae_g13075 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Clavulariidae_g13076 | |
| Clavulariidae_g13077 | |
| Clavulariidae_g13078 | |
| Clavulariidae_g13079 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g1308 | PROTEIN CBG26694 |
| Clavulariidae_g13080 | PROTEIN CBG23764 |
| Clavulariidae_g13081 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g13082 | THAP DOMAIN PROTEIN |
| Clavulariidae_g13083 | EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED |
| Clavulariidae_g13084 | EXPRESSED PROTEIN |
| Clavulariidae_g13085 | THAP DOMAIN PROTEIN |
| Clavulariidae_g13086 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g13087 | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 |
| Clavulariidae_g13088 | |
| Clavulariidae_g13089 | |
| Clavulariidae_g1309 | |
| Clavulariidae_g13090 | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 |
| Clavulariidae_g13091 | PROTEIN CBG26694 |
| Clavulariidae_g13092 | PROTEIN-TYROSINE SULFOTRANSFERASE 2 |
| Clavulariidae_g13093 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Clavulariidae_g13094 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g13095 | SERINE-THREONINE PROTEIN KINASE |
| Clavulariidae_g13096 | DNA POLYMERASE |
| Clavulariidae_g13097 | |
| Clavulariidae_g13098 | COLLAGEN ALPHA |
| Clavulariidae_g13099 | |
| Clavulariidae_g131 | GLYCOPROTEIN HORMONE RECEPTOR |
| Clavulariidae_g1310 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Clavulariidae_g13100 | COLLAGEN ALPHA |
| Clavulariidae_g13101 |
