Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g13373 | |
| Clavulariidae_g13374 | UNCHARACTERIZED |
| Clavulariidae_g13375 | KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE |
| Clavulariidae_g13376 | PX DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13377 | |
| Clavulariidae_g13378 | |
| Clavulariidae_g13379 | |
| Clavulariidae_g1338 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
| Clavulariidae_g13380 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13381 | |
| Clavulariidae_g13382 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13383 | |
| Clavulariidae_g13384 | |
| Clavulariidae_g13385 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13386 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Clavulariidae_g13387 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Clavulariidae_g13388 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g13389 | |
| Clavulariidae_g1339 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13390 | |
| Clavulariidae_g13391 | |
| Clavulariidae_g13392 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13393 | DNA HELICASE RECQ FAMILY MEMBER |
| Clavulariidae_g13394 | MOLTING PROTEIN MLT-4 |
| Clavulariidae_g13395 | |
| Clavulariidae_g13396 | |
| Clavulariidae_g13397 | |
| Clavulariidae_g13398 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| Clavulariidae_g13399 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g134 | DNA POLYMERASE |
| Clavulariidae_g1340 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13400 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13401 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13402 | TRANSPOSON |
| Clavulariidae_g13403 | UNCHARACTERIZED |
| Clavulariidae_g13404 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13405 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13406 | T4-TYPE LYSOZYME 1-RELATED |
| Clavulariidae_g13407 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13408 | |
| Clavulariidae_g13409 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1341 | |
| Clavulariidae_g13410 | PROTEIN B, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g13411 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13412 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13413 | |
| Clavulariidae_g13414 | |
| Clavulariidae_g13415 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13416 | |
| Clavulariidae_g13417 |
