Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g13463 | FACIOGENITAL DYSPLASIA PROTEIN |
| Clavulariidae_g13464 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13465 | PROTEIN B, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g13466 | |
| Clavulariidae_g13467 | |
| Clavulariidae_g13468 | SLEI FAMILY PROTEIN |
| Clavulariidae_g13469 | SIMILAR TO RIKEN CDNA E130308A19 |
| Clavulariidae_g1347 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13470 | |
| Clavulariidae_g13471 | RETROTRANSPOSON |
| Clavulariidae_g13472 | HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13473 | PX DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13474 | |
| Clavulariidae_g13475 | PX SERINE/THREONINE KINASE PXK |
| Clavulariidae_g13476 | PROTEIN CBG26694 |
| Clavulariidae_g13477 | |
| Clavulariidae_g13478 | |
| Clavulariidae_g13479 | RHO FAMILY GTPASE |
| Clavulariidae_g1348 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13480 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13481 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED |
| Clavulariidae_g13482 | |
| Clavulariidae_g13483 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED |
| Clavulariidae_g13484 | THAP DOMAIN-CONTAINING PROTEIN 6 |
| Clavulariidae_g13485 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED |
| Clavulariidae_g13486 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g13487 | |
| Clavulariidae_g13488 | BONUS, ISOFORM C-RELATED |
| Clavulariidae_g13489 | BONUS, ISOFORM C-RELATED |
| Clavulariidae_g1349 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13490 | |
| Clavulariidae_g13491 | |
| Clavulariidae_g13492 | |
| Clavulariidae_g13493 | PROTEIN CBG23764 |
| Clavulariidae_g13494 | |
| Clavulariidae_g13495 | |
| Clavulariidae_g13496 | |
| Clavulariidae_g13497 | SI:CH211-266K2.1 |
| Clavulariidae_g13498 | POTE ANKYRIN DOMAIN |
| Clavulariidae_g13499 | |
| Clavulariidae_g135 | |
| Clavulariidae_g1350 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13500 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13501 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Clavulariidae_g13502 | - |
| Clavulariidae_g13503 | PX DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13504 | |
| Clavulariidae_g13505 | PENTRAXIN |
| Clavulariidae_g13506 | PENTRAXIN |
| Clavulariidae_g13507 |
