About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g13599THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g136
Clavulariidae_g1360
Clavulariidae_g13600EXPRESSED PROTEIN
Clavulariidae_g13601
Clavulariidae_g13602BONUS, ISOFORM C-RELATED
Clavulariidae_g13603PROTEIN FOLDING REGULATOR
Clavulariidae_g13604SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER
Clavulariidae_g13605
Clavulariidae_g13606PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
Clavulariidae_g13607PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
Clavulariidae_g13608
Clavulariidae_g13609REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1361CYTOCHROME P450 508A4-RELATED
Clavulariidae_g13610
Clavulariidae_g13611THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g13612SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER
Clavulariidae_g13613
Clavulariidae_g13614
Clavulariidae_g13615
Clavulariidae_g13616
Clavulariidae_g13617
Clavulariidae_g13618SHISA
Clavulariidae_g13619UNCHARACTERIZED
Clavulariidae_g1362STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g13620REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13621
Clavulariidae_g13622TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g13623
Clavulariidae_g13624
Clavulariidae_g13625
Clavulariidae_g13626
Clavulariidae_g13627THAP DOMAIN PROTEIN
Clavulariidae_g13628THAP DOMAIN-CONTAINING
Clavulariidae_g13629
Clavulariidae_g1363CYTOCHROME P450 508A4-RELATED
Clavulariidae_g13630
Clavulariidae_g13631
Clavulariidae_g13632BONUS, ISOFORM C-RELATED
Clavulariidae_g13633BONUS, ISOFORM C-RELATED
Clavulariidae_g13634LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
Clavulariidae_g13635
Clavulariidae_g13636THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g13637
Clavulariidae_g13638
Clavulariidae_g13639
Clavulariidae_g1364
Clavulariidae_g13640
Clavulariidae_g13641HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g13642DUF3504 DOMAIN-CONTAINING PROTEIN
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